Deep evolutionary analysis reveals the design principles of fold A glycosyltransferases R Taujale, A Venkat, LC Huang, Z Zhou, W Yeung, KM Rasheed, S Li, ... elife 9, e54532, 2020 | 66 | 2020 |
Text2Seg: Remote Sensing Image Semantic Segmentation via Text-Guided Visual Foundation Models J Zhang*, Z Zhou*, G Mai, L Mu, M Hu, S Li arXiv preprint arXiv:2304.10597, 2023 | 30 | 2023 |
Mapping the glycosyltransferase fold landscape using interpretable deep learning R Taujale*, Z Zhou*, W Yeung, KW Moremen, S Li, N Kannan Nature communications 12 (1), 1-12, 2021 | 28 | 2021 |
Alignment-free estimation of sequence conservation for identifying functional sites using protein sequence embeddings W Yeung*, Z Zhou*, S Li, N Kannan Briefings in Bioinformatics 24 (1), bbac599, 2023 | 10 | 2023 |
Phosformer: an explainable transformer model for protein kinase-specific phosphorylation predictions Z Zhou, W Yeung, N Gravel, M Salcedo, S Soleymani, S Li, N Kannan Bioinformatics 39 (2), btad046, 2023 | 8 | 2023 |
Badsam: Exploring security vulnerabilities of sam via backdoor attacks Z Guan*, M Hu*, Z Zhou*, J Zhang, S Li, N Liu arXiv preprint arXiv:2305.03289, 2023 | 7 | 2023 |
Tree visualizations of protein sequence embedding space enable improved functional clustering of diverse protein superfamilies W Yeung*, Z Zhou*, L Mathew, N Gravel, R Taujale, B O’Boyle, M Salcedo, ... Briefings in Bioinformatics, 2023 | 4 | 2023 |
Functional classification and validation of yeast prenylation motifs using machine learning and genetic reporters BM Berger, W Yeung, A Goyal, Z Zhou, ER Hildebrandt, N Kannan, ... Plos one 17 (6), e0270128, 2022 | 4 | 2022 |
Identifying keystone species in the microbial community based on cross-sectional data M Li, J Zhang, B Wu, Z Zhou, Y Xu Current gene therapy 18 (5), 296-306, 2018 | 4 | 2018 |
XAI meets Biology: A Comprehensive Review of Explainable AI in Bioinformatics Applications Z Zhou, M Hu, M Salcedo, N Gravel, W Yeung, A Venkat, D Guo, J Zhang, ... arXiv preprint arXiv:2312.06082, 2023 | 3 | 2023 |
Pigmentation-based visual learning for salvelinus fontinalis individual re-identification Z Zhou, NP Hitt, BH Letcher, W Shi, S Li 2022 IEEE International Conference on Big Data (Big Data), 6850-6852, 2022 | 2 | 2022 |
BadSAM: Exploring Security Vulnerabilities of SAM via Backdoor Attacks (Student Abstract) Z Guan, M Hu, Z Zhou, J Zhang, S Li, N Liu Proceedings of the AAAI Conference on Artificial Intelligence 38 (21), 23506 …, 2024 | 1 | 2024 |
Aging Contrast: A Contrastive Learning Framework for Fish Re-identification Across Seasons and Years W Shi, Z Zhou, BH Letcher, N Hitt, Y Kanno, R Futamura, O Kishida, ... Australasian Joint Conference on Artificial Intelligence, 252-264, 2023 | 1 | 2023 |
Img2Loc: Revisiting Image Geolocalization using Multi-modality Foundation Models and Image-based Retrieval-Augmented Generation Z Zhou, J Zhang, Z Guan, M Hu, N Lao, L Mu, S Li, G Mai arXiv preprint arXiv:2403.19584, 2024 | | 2024 |
Methods and systems for phosphormer model evaluation N Kannan, Z Zhongliang, S Li, W Yeung US Patent App. 18/242,921, 2024 | | 2024 |
Using explainable machine learning to uncover the kinase–substrate interaction landscape Z Zhou, W Yeung, S Soleymani, N Gravel, M Salcedo, S Li, N Kannan Bioinformatics 40 (2), btae033, 2024 | | 2024 |
Informatic challenges and advances in illuminating the druggable proteome ER Taujal, N Gravel, Z Zhou, W Yeung, K Kochut, N Kannan Drug Discovery Today, 103894, 2024 | | 2024 |
Causality-Based Black-Box Backdoor Detection M Hu, Z Guan, Z Zhou, J Zhang, S Li | | 2023 |
Explaining the blackbox - Unraveling Protein Language Model's Learning Mechanisms for Kinase-Specific Phosphorylation Prediction Z Zhou, W Yeung, S Soleymani, N Gravel, M Salcedo, S Li, N Kannan International Conference on Machine Learning, Workshop on Computational …, 2023 | | 2023 |
Mapping sequence-structure-function relationships in glycosyltransferases using deep learning models and data visualization tools N Kannan, R Taujale, Z Zhou, A Venkat, S Soleymani, A Priyadarshi, ... GLYCOBIOLOGY 31 (12), 1764-1764, 2021 | | 2021 |