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Woong-Hee Shin
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Prediction of protein structure and interaction by GALAXY protein modeling programs
WH Shin, GR Lee, L Heo, H Lee, C Seok
Bio Design 2 (1), 1-11, 2014
1862014
Structure and inhibition of EV-D68, a virus that causes respiratory illness in children
Y Liu, J Sheng, A Fokine, G Meng, WH Shin, F Long, RJ Kuhn, D Kihara, ...
Science 347 (6217), 71-74, 2015
1672015
Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment
MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ...
Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019
1112019
GalaxySite: ligand-binding-site prediction by using molecular docking
L Heo, WH Shin, MS Lee, C Seok
Nucleic acids research 42 (W1), W210-W214, 2014
1042014
GalaxyDock2: Protein–ligand docking using beta‐complex and global optimization
WH Shin, JK Kim, DS Kim, C Seok
Journal of computational chemistry 34 (30), 2647-2656, 2013
872013
GalaxyDock: protein–ligand docking with flexible protein side-chains
WH Shin, C Seok
Journal of chemical information and modeling 52 (12), 3225-3232, 2012
812012
In silico structure-based approaches to discover protein-protein interaction-targeting drugs
WH Shin, CW Christoffer, D Kihara
Methods 131, 22-32, 2017
802017
AK-Score: Accurate Protein-Ligand Binding Affinity Prediction Using an Ensemble of 3D-Convolutional Neural Networks
Y Kwon, WH Shin, J Ko, J Lee
International Journal of Molecular Science 21 (22), 8424, 2020
782020
Three-Dimensional Compound Comparison Methods and Their Application in Drug Discovery
WH Shin, X Zhu, MG Bures, D Kihara
Molecules 20 (7), 12841-12862, 2015
742015
Current challenges and opportunities in designing protein–protein interaction targeted drugs
WH Shin, K Kumazawa, K Imai, T Hirokawa, D Kihara
Advances and Applications in Bioinformatics and Chemistry, 11-25, 2020
582020
LigDockCSA: protein–ligand docking using conformational space annealing
WH Shin, L Heo, J Lee, J Ko, C Seok, J Lee
Journal of computational chemistry 32 (15), 3226-3232, 2011
522011
GalaxyDock BP2 score: a hybrid scoring function for accurate protein–ligand docking
M Baek, WH Shin, HW Chung, C Seok
Journal of Computer-Aided Molecular Design 31, 653-666, 2017
512017
Measured and predicted affinities of binding and relative potencies to activate the AhR of PAHs and their alkylated analogues
S Lee, WH Shin, S Hong, H Kang, D Jung, UH Yim, WJ Shim, JS Khim, ...
Chemosphere 139, 23-29, 2015
392015
Modeling the assembly order of multimeric heteroprotein complexes
LX Peterson, Y Togawa, J Esquivel-Rodriguez, G Terashi, C Christoffer, ...
PLoS computational biology 14 (1), e1005937, 2018
332018
An iterative compound screening contest method for identifying target protein inhibitors using the tyrosine-protein kinase Yes
S Chiba, T Ishida, K Ikeda, M Mochizuki, R Teramoto, YH Taguchi, ...
Scientific Reports 7 (1), 12038, 2017
322017
PL-PatchSurfer2: Improved Local Surface Matching-Based Virtual Screening Method That Is Tolerant to Target and Ligand Structure Variation
WH Shin, CW Christoffer, J Wang, D Kihara
Journal of Chemical Information and Modeling 56 (9), 1676-1691, 2016
292016
Current progress and future perspectives of polypharmacology: From the view of non-small cell lung cancer
R Karuppasamy, S Veerappapillai, S Maiti, WH Shin, D Kihara
Seminars in cancer biology 68, 84-91, 2021
272021
55 Years of the Rossmann fold
WH Shin, D Kihara
Protein Supersecondary Structures: Methods and Protocols, 1-13, 2019
242019
Improved performance in CAPRI round 37 using LZerD docking and template‐based modeling with combined scoring functions
LX Peterson, WH Shin, H Kim, D Kihara
Proteins: Structure, Function, and Bioinformatics 86, 311-320, 2018
232018
Human and server docking prediction for CAPRI round 30‐35 using LZerD with combined scoring functions
LX Peterson, H Kim, J Esquivel‐Rodriguez, A Roy, X Han, WH Shin, ...
Proteins: Structure, Function, and Bioinformatics 85 (3), 513-527, 2017
192017
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