Gydo Van Zundert
Gydo Van Zundert
Verified email at schrodinger.com - Homepage
Title
Cited by
Cited by
Year
The HADDOCK2. 2 web server: user-friendly integrative modeling of biomolecular complexes
GCP Van Zundert, J Rodrigues, M Trellet, C Schmitz, PL Kastritis, ...
Journal of molecular biology 428 (4), 720-725, 2016
11642016
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment
MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ...
Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016
1292016
Probing a cell-embedded megadalton protein complex by DNP-supported solid-state NMR
M Kaplan, A Cukkemane, GCP Van Zundert, S Narasimhan, M DaniŽls, ...
Nature methods 12 (7), 649-652, 2015
1162015
Integrative modeling of biomolecular complexes: HADDOCKing with cryo-electron microscopy data
GCP van Zundert, ASJ Melquiond, AMJJ Bonvin
Structure 23 (5), 949-960, 2015
662015
Defining the limits of homology modeling in information‐driven protein docking
J Rodrigues, ASJ Melquiond, E Karaca, M Trellet, M Van Dijk, ...
Proteins: Structure, Function, and Bioinformatics 81 (12), 2119-2128, 2013
602013
DisVis: quantifying and visualizing accessible interaction space of distance-restrained biomolecular complexes
GCP Van Zundert, AMJJ Bonvin
Bioinformatics 31 (19), 3222-3224, 2015
442015
IR Spectroscopy of Isolated Neutral and Protonated Adenine and 9‐Methyladenine
GCP Van Zundert, S Jaeqx, G Berden, JM Bakker, K Kleinermanns, ...
ChemPhysChem 12 (10), 1921-1927, 2011
432011
Modeling protein–protein complexes using the HADDOCK webserver “modeling protein complexes with HADDOCK”
GCP van Zundert, AMJJ Bonvin
Protein Structure Prediction, 163-179, 2014
382014
The DisVis and PowerFit web servers: explorative and integrative modeling of biomolecular complexes
GCP van Zundert, M Trellet, J Schaarschmidt, Z Kurkcuoglu, M David, ...
Journal of molecular biology 429 (3), 399-407, 2017
322017
Fast and sensitive rigid-body fitting into cryo-EM density maps with PowerFit
G Cp van Zundert, A Mjj Bonvin
AIMS Biophysics 2 (2), 73-87, 2015
312015
qFit-ligand Reveals Widespread Conformational Heterogeneity of Drug-Like Molecules in X-Ray Electron Density Maps
GCP van Zundert, BM Hudson, SHP de Oliveira, DA Keedy, R Fonseca, ...
Journal of medicinal chemistry 61 (24), 11183-11198, 2018
272018
Sense and simplicity in HADDOCK scoring: Lessons from CASP‐CAPRI round 1
A Vangone, J Rodrigues, LC Xue, GCP van Zundert, C Geng, ...
Proteins: Structure, Function, and Bioinformatics 85 (3), 417-423, 2017
272017
GemSpot: a pipeline for robust modeling of ligands into cryo-EM Maps
MJ Robertson, GCP van Zundert, K Borrelli, G Skiniotis
Structure 28 (6), 707-716. e3, 2020
202020
Synthetic group A streptogramin antibiotics that overcome Vat resistance
Q Li, J Pellegrino, DJ Lee, AA Tran, HA Chaires, R Wang, JE Park, K Ji, ...
Nature 586 (7827), 145-150, 2020
152020
Structural basis of GM-CSF and IL-2 sequestration by the viral decoy receptor GIF
J Felix, E Kandiah, S De Munck, Y Bloch, GCP Van Zundert, K Pauwels, ...
Nature communications 7 (1), 1-13, 2016
112016
Defining the limits and reliability of rigid-body fitting in cryo-EM maps using multi-scale image pyramids
GCP Van Zundert, A Bonvin
Journal of structural biology 195 (2), 252-258, 2016
102016
Macromolecular refinement of X-ray and cryoelectron microscopy structures with Phenix/OPLS3e for improved structure and ligand quality
GCP van Zundert, NW Moriarty, OV Sobolev, PD Adams, KW Borrelli
Structure, 2021
52021
qFit 3: Protein and ligand multiconformer modeling for X‐ray crystallographic and single‐particle cryo‐EM density maps
BT Riley, SA Wankowicz, SHP de Oliveira, GCP van Zundert, DW Hogan, ...
Protein Science 30 (1), 270-285, 2021
42021
Synthesis and mechanism of action of group A streptogramin antibiotics that overcome resistance
Q Li, J Pellegrino, DJ Lee, A Tran, R Wang, J Park, K Ji, D Chow, N Zhang, ...
42019
Sense and simplicity in HADDOCK scoring: lessons from CASP‐CAPRI (page 418)
A Vangone, J Rodrigues, LC Xue, GCP van Zundert, C Geng, ...
Proteins: Structure, Function, and Bioinformatics 85 (8), 1589-1590, 2017
22017
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