Jose Maria Carazo
Jose Maria Carazo
Professor, Spanish National Center for Biotechnology, CNB-CSIC
Verified email at
Cited by
Cited by
GENECODIS: a web-based tool for finding significant concurrent annotations in gene lists
P Carmona-Saez, M Chagoyen, F Tirado, JM Carazo, A Pascual-Montano
Genome biology 8 (1), 1-8, 2007
XMIPP: a new generation of an open-source image processing package for electron microscopy
COS Sorzano, R Marabini, J Velázquez-Muriel, JR Bilbao-Castro, ...
Journal of structural biology 148 (2), 194-204, 2004
GeneCodis: interpreting gene lists through enrichment analysis and integration of diverse biological information
R Nogales-Cadenas, P Carmona-Saez, M Vazquez, C Vicente, X Yang, ...
Nucleic acids research 37 (suppl_2), W317-W322, 2009
Nonsmooth nonnegative matrix factorization (nsNMF)
A Pascual-Montano, JM Carazo, K Kochi, D Lehmann, ...
IEEE transactions on pattern analysis and machine intelligence 28 (3), 403-415, 2006
Disentangling conformational states of macromolecules in 3D-EM through likelihood optimization
SHW Scheres, H Gao, M Valle, GT Herman, PPB Eggermont, J Frank, ...
Single-Particle Cryo-Electron Microscopy: The Path Toward Atomic Resolution …, 2018
Image processing for electron microscopy single-particle analysis using XMIPP
SHW Scheres, R Núñez-Ramírez, COS Sorzano, JM Carazo, R Marabini
Nature protocols 3 (6), 977-990, 2008
Scipion: A software framework toward integration, reproducibility and validation in 3D electron microscopy
JM De la Rosa-Trevín, A Quintana, L Del Cano, A Zaldívar, I Foche, ...
Journal of structural biology 195 (1), 93-99, 2016
Consistent and elastic registration of histological sections using vector-spline regularization
I Arganda-Carreras, COS Sorzano, R Marabini, JM Carazo, ...
International Workshop on Computer Vision Approaches to Medical Image …, 2006
Maximum-likelihood multi-reference refinement for electron microscopy images
SHW Scheres, M Valle, R Nuñez, COS Sorzano, R Marabini, GT Herman, ...
Journal of molecular biology 348 (1), 139-149, 2005
Phylogenetic reconstruction using an unsupervised growing neural network that adopts the topology of a phylogenetic tree
J Dopazo, JM Carazo
Journal of molecular evolution 44 (2), 226-233, 1997
Biclustering of gene expression data by non-smooth non-negative matrix factorization
P Carmona-Saez, RD Pascual-Marqui, F Tirado, JM Carazo, ...
BMC bioinformatics 7 (1), 1-18, 2006
Xmipp: an image processing package for electron microscopy
R Marabini, IM Masegosa, MC San Martın, S Marco, JJ Fernandez, ...
Journal of structural biology 116 (1), 237-240, 1996
Xmipp 3.0: an improved software suite for image processing in electron microscopy
JM De la Rosa-Trevín, J Otón, R Marabini, A Zaldivar, J Vargas, ...
Journal of structural biology 184 (2), 321-328, 2013
A clustering approach to multireference alignment of single-particle projections in electron microscopy
COS Sorzano, JR Bilbao-Castro, Y Shkolnisky, M Alcorlo, R Melero, ...
Journal of structural biology 171 (2), 197-206, 2010
3D reconstruction in electron microscopy using ART with smooth spherically symmetric volume elements (blobs)
R Marabini, GT Herman, JM Carazo
Ultramicroscopy 72 (1-2), 53-65, 1998
Quaternary structures of tumor suppressor p53 and a specific p53–DNA complex
H Tidow, R Melero, E Mylonas, SMV Freund, JG Grossmann, JM Carazo, ...
Proceedings of the National Academy of Sciences 104 (30), 12324-12329, 2007
Integrated analysis of gene expression by association rules discovery
P Carmona-Saez, M Chagoyen, A Rodriguez, O Trelles, JM Carazo, ...
BMC bioinformatics 7 (1), 1-16, 2006
A structural model for the Escherichia coli DnaB helicase based on electron microscopy data
MC San Martin, NPJ Stamford, N Dammerova, NE Dixon, JM Carazo
Journal of structural biology 114 (3), 167-176, 1995
General morphology and capsid fine structure of African swine fever virus particles
JL Carrascosa, JM Carazo, AL Carrascosa, N García, A Santisteban, ...
Virology 132 (1), 160-172, 1984
Two-step demodulation based on the Gram–Schmidt orthonormalization method
J Vargas, JA Quiroga, COS Sorzano, JC Estrada, JM Carazo
Optics letters 37 (3), 443-445, 2012
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