| From cultured to uncultured genome sequences: metagenomics and modeling microbial ecosystems DR Garza, BE Dutilh Cellular and Molecular Life Sciences 72, 4287-4308, 2015 | 161 | 2015 |
| Towards predicting the environmental metabolome from metagenomics with a mechanistic model DR Garza, MC van Verk, MA Huynen, BE Dutilh Nature microbiology 3 (4), 456-460, 2018 | 85 | 2018 |
| Metabolic models predict bacterial passengers in colorectal cancer DR Garza, R Taddese, J Wirbel, G Zeller, A Boleij, MA Huynen, BE Dutilh Cancer & Metabolism 8, 1-13, 2020 | 38 | 2020 |
| Comparative genomics of 274 Vibrio cholerae genomes reveals mobile functions structuring three niche dimensions BE Dutilh, CC Thompson, ACP Vicente, MA Marin, C Lee, GGZ Silva, ... BMC genomics 15, 1-11, 2014 | 37 | 2014 |
| Growth rate alterations of human colorectal cancer cells by 157 gut bacteria R Taddese, DR Garza, LN Ruiter, MI de Jonge, C Belzer, S Aalvink, ... Gut Microbes 12 (1), 1799733, 2020 | 28 | 2020 |
| Optimized bacterial DNA isolation method for microbiome analysis of human tissues CE Bruggeling, DR Garza, S Achouiti, W Mes, BE Dutilh, A Boleij Microbiologyopen 10 (3), e1191, 2021 | 24 | 2021 |
| Genome-wide study of the defective sucrose fermenter strain of Vibrio cholerae from the Latin American cholera epidemic DR Garza, CC Thompson, ECB Loureiro, BE Dutilh, DT Inada, ECS Junior, ... PloS one 7 (5), e37283, 2012 | 20 | 2012 |
| Elucidating genomic gaps using phenotypic profiles DA Cuevas, D Garza, SE Sanchez, J Rostron, CS Henry, V Vonstein, ... F1000Research 3, 210, 2016 | 14 | 2016 |
| Vibrio cholerae O1 from superficial water of the Tucunduba Stream, Brazilian Amazon LLC Sá, ERV Vale, DR Garza, ACP Vicente Brazilian Journal of Microbiology 43, 635-638, 2012 | 13 | 2012 |
| A Prioritized and Validated Resource of Mitochondrial Proteins in Plasmodium Identifies Unique Biology SL van Esveld, L Meerstein‐Kessel, C Boshoven, JF Baaij, K Barylyuk, ... Msphere 6 (5), 10.1128/msphere. 00614-21, 2021 | 12 | 2021 |
| Towards predicting the environmental metabolome from metagenomics with a mechanistic model. Nat Microbiol 3: 456–460 DR Garza, MC Van Verk, MA Huynen, BE Dutilh | 8 | 2018 |
| Complete genome sequence of a sucrose-nonfermenting epidemic strain of Vibrio cholerae O1 from Brazil LLCS Morais, DR Garza, ECB Loureiro, KNB Nunes, RS Vellasco, ... Journal of bacteriology 194 (10), 2772-2772, 2012 | 8 | 2012 |
| BCG-induced trained immunity enhances acellular pertussis vaccination responses in an explorative randomized clinical trial J Gillard, BA Blok, DR Garza, PB Venkatasubramanian, E Simonetti, ... npj Vaccines 7 (1), 21, 2022 | 5 | 2022 |
| Novel insights from the Plasmodium falciparum sporozoite-specific proteome by probabilistic integration of 26 studies L Meerstein-Kessel, J Venhuizen, D Garza, NI Proellochs, EJ Vos, ... PLoS Computational Biology 17 (4), e1008067, 2021 | 5 | 2021 |
| Population and Genetic Study of Vibrio cholerae from the Amazon Environment Confirms that the WASA-1 Prophage Is the Main Marker of the Epidemic Strain that … LLCS Morais, DR Garza, ECB Loureiro, ER Vale, DSAS Santos, ... PLoS One 8 (11), e81372, 2013 | 5 | 2013 |
| Metabolic models of human gut microbiota: Advances and challenges DR Garza, D Gonze, H Zafeiropoulos, B Liu, K Faust Cell systems 14 (2), 109-121, 2023 | 4 | 2023 |
| miaSim: an R/Bioconductor package to easily simulate microbial community dynamics Y Gao, Y Şimşek, E Gheysen, T Borman, Y Li, L Lahti, K Faust, DR Garza Methods in Ecology and Evolution 14 (8), 1967-1980, 2023 | 2 | 2023 |
| Elucidating genomic gaps using phenotypic profiles [version 2; peer review: 1 approved, 1 approved with reservations] DA Cuevas, D Garza, SE Sanchez, J Rostron, CS Henry, V Vonstein, ... May, 2019 | 2 | 2019 |
| Starvation responses impact interaction dynamics of human gut bacteria Bacteroides thetaiotaomicron and Roseburia intestinalis B Liu, DR Garza, D Gonze, A Krzynowek, K Simoens, K Bernaerts, ... The ISME Journal 17 (11), 1940-1952, 2023 | 1 | 2023 |
| Improving genome-scale metabolic models of incomplete genomes with deep learning MD Boer, C Melkonian, H Zafeiropoulos, AF Haas, D Garza, BE Dutilh bioRxiv, 2023.07. 10.548314, 2023 | 1 | 2023 |
Bas E. DutilhMicroverse Cluster, Friedrich Schiller University Jena | Theoretical Biology and BioinformaticsVerified email at uni-jena.de
