| MultiQC: summarize analysis results for multiple tools and samples in a single report P Ewels, M Magnusson, S Lundin, M Käller Bioinformatics 32 (19), 3047-3048, 2016 | 1150 | 2016 |
| Mapping long-range promoter contacts in human cells with high-resolution capture Hi-C B Mifsud, F Tavares-Cadete, AN Young, R Sugar, S Schoenfelder, ... Nature genetics 47 (6), 598, 2015 | 650 | 2015 |
| Genetic determinants of ulcerative colitis include the ECM1 locus and five loci implicated in Crohn's disease SA Fisher, M Tremelling, CA Anderson, R Gwilliam, S Bumpstead, ... Nature genetics 40 (6), 710-712, 2008 | 480 | 2008 |
| HiCUP: pipeline for mapping and processing Hi-C data S Wingett, P Ewels, M Furlan-Magaril, T Nagano, S Schoenfelder, ... F1000Research 4, 2015 | 247 | 2015 |
| Global reorganization of the nuclear landscape in senescent cells T Chandra, PA Ewels, S Schoenfelder, M Furlan-Magaril, SW Wingett, ... Cell reports 10 (4), 471-483, 2015 | 188 | 2015 |
| Large scale association analysis of novel genetic loci for coronary artery disease Coronary Artery Disease Consortium Arteriosclerosis, thrombosis, and vascular biology 29 (5), 774-780, 2009 | 172 | 2009 |
| Molecular signatures of plastic phenotypes in two eusocial insect species with simple societies S Patalano, A Vlasova, C Wyatt, P Ewels, F Camara, PG Ferreira, ... Proceedings of the National Academy of Sciences 112 (45), 13970-13975, 2015 | 140 | 2015 |
| Sorting nexin-1 defines an early phase of Salmonella-containing vacuole-remodeling during Salmonella infection MV Bujny, PA Ewels, S Humphrey, N Attar, MA Jepson, PJ Cullen Journal of cell science 121 (12), 2027-2036, 2008 | 99 | 2008 |
| High-throughput genotyping of Salmonella enterica serovar Typhi allowing geographical assignment of haplotypes and pathotypes within an urban District of Jakarta, Indonesia S Baker, K Holt, E Van de Vosse, P Roumagnac, S Whitehead, E King, ... Journal of clinical microbiology 46 (5), 1741-1746, 2008 | 82 | 2008 |
| Understanding functional miRNA–target interactions in vivo by site-specific genome engineering AR Bassett, G Azzam, L Wheatley, C Tibbit, T Rajakumar, S McGowan, ... Nature communications 5 (1), 1-11, 2014 | 74 | 2014 |
| A Complete Overhaul of the Electron Energy-Loss Spectroscopy and X-Ray Absorption Spectroscopy Database: eelsdb.eu P Ewels, T Sikora, V Serin, CP Ewels, L Lajaunie Microscopy and Microanalysis, 1-8, 2016 | 60 | 2016 |
| The nf-core framework for community-curated bioinformatics pipelines PA Ewels, A Peltzer, S Fillinger, H Patel, J Alneberg, A Wilm, MU Garcia, ... Nature Biotechnology 38 (3), 276-278, 2020 | 43 | 2020 |
| nf-core: Community curated bioinformatics pipelines PA Ewels, A Peltzer, S Fillinger, J Alneberg, H Patel, A Wilm, MU Garcia, ... bioRxiv, 610741, 2019 | 18 | 2019 |
| Transcriptomics and methylomics of CD4-positive T cells in arsenic-exposed women K Engström, TK Wojdacz, F Marabita, P Ewels, M Käller, F Vezzi, ... Archives of toxicology 91 (5), 2067-2078, 2017 | 17 | 2017 |
| Cluster Flow: A user-friendly bioinformatics workflow tool P Ewels, F Krueger, M Käller, S Andrews F1000Research 5, 2016 | 16 | 2016 |
| Single base resolution analysis of 5-hydroxymethylcytosine in 188 human genes: implications for hepatic gene expression M Ivanov, M Kals, V Lauschke, I Barragan, P Ewels, M Käller, T Axelsson, ... Nucleic acids research 44 (14), 6756-6769, 2016 | 15 | 2016 |
| Building an international consortium for tracking coronavirus health status E Segal, F Zhang, X Lin, G King, O Shalem, S Shilo, WE Allen, ... Nature Medicine, 1-4, 2020 | 12 | 2020 |
| FastQC: High Throughput sequence QC report v. 0.10. 1 S Andrews, P Lindenbaum, B Howard, P Ewels Cambridge, UK: Babraham Bioinformatics, 2011 | 11 | 2011 |
| Meet the neighbours: tools to dissect nuclear structure and function CS Osborne, PA Ewels, ANC Young Briefings in functional genomics 10 (1), 11-17, 2011 | 10 | 2011 |
| Sarek: A portable workflow for whole-genome sequencing analysis of germline and somatic variants M Garcia, S Juhos, M Larsson, PI Olason, M Martin, J Eisfeldt, ... F1000Research 9, 2020 | 5 | 2020 |
