Marilia D. V. Braga
Marilia D. V. Braga
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Analysis and functional annotation of an expressed sequence tag collection for tropical crop sugarcane
AL Vettore, FR da Silva, EL Kemper, GM Souza, AM da Silva, MIT Ferro, ...
Genome research 13 (12), 2725-2735, 2003
3452003
Footprints of inversions at present and past pseudoautosomal boundaries in human sex chromosomes
C Lemaitre, MDV Braga, C Gautier, MF Sagot, E Tannier, GAB Marais
Genome biology and evolution 1, 56-66, 2009
802009
Whole-genome analysis of transporters in the plant pathogen Xylella fastidiosa
J Meidanis, MDV Braga, S Verjovski-Almeida
Microbiology and Molecular Biology Reviews 66 (2), 272-299, 2002
602002
Bioinformatics of the sugarcane EST project
GP Telles, MDV Braga, Z Dias, L Tzy-Li, JAA Quitzau, FR Silva, ...
Genetics and Molecular Biology 24 (1-4), 9-15, 2001
562001
Double cut and join with insertions and deletions
MDV Braga, E Willing, J Stoye
Journal of Computational Biology 18 (9), 1167-1184, 2011
552011
The solution space of sorting by DCJ
MDV Braga, J Stoye
Journal of Computational Biology 17 (9), 1145-1165, 2010
552010
Exploring the solution space of sorting by reversals, with experiments and an application to evolution
MDV Braga, MF Sagot, C Scornavacca, E Tannier
IEEE/ACM Transactions on Computational Biology and Bioinformatics 5 (3), 348-356, 2008
482008
Genomic distance with DCJ and indels
MDV Braga, E Willing, J Stoye
International Workshop on Algorithms in Bioinformatics, 90-101, 2010
382010
Repetition-free longest common subsequence
SS Adi, MDV Braga, CG Fernandes, CE Ferreira, FV Martinez, MF Sagot, ...
Discrete Applied Mathematics 158 (12), 1315-1324, 2010
362010
The solution space of sorting by reversals
MDV Braga, MF Sagot, C Scornavacca, E Tannier
International Symposium on Bioinformatics Research and Applications, 293-304, 2007
342007
baobabLUNA : the solution space of sorting by reversals
MDV Braga
Bioinformatics 25 (14), 1833-1835, 2009
272009
Restricted DCJ model: rearrangement problems with chromosome reincorporation
J Kováč, R Warren, MDV Braga, J Stoye
Journal of Computational Biology 18 (9), 1231-1241, 2011
222011
On the family-free DCJ distance and similarity
FV Martinez, P Feijão, MDV Braga, J Stoye
Algorithms for Molecular Biology 10 (1), 13, 2015
172015
DCJ-indel and DCJ-substitution distances with distinct operation costs
PH da Silva, R Machado, S Dantas, MDV Braga
Algorithms for Molecular Biology 8 (1), 21, 2013
152013
An algorithm that builds a set of strings given its overlap graph
MDV Braga, J Meidanis
Latin American Symposium on Theoretical Informatics, 52-63, 2002
152002
The potential of family-free genome comparison
MDV Braga, C Chauve, D Doerr, K Jahn, J Stoye, A Thévenin, R Wittler
Models and Algorithms for Genome Evolution, 287-307, 2013
142013
Counting all DCJ sorting scenarios
MDV Braga, J Stoye
RECOMB International Workshop on Comparative Genomics, 36-47, 2009
142009
On the weight of indels in genomic distances
MDV Braga, R Machado, LC Ribeiro, J Stoye
BMC bioinformatics 12 (S9), S13, 2011
132011
Genomic distance under gene substitutions
MDV Braga, R Machado, LC Ribeiro, J Stoye
BMC bioinformatics 12 (S9), S8, 2011
132011
Exploring the solution space of sorting by reversals when analyzing genome rearrangements
MDV Braga
France: Université Lyon 1, 2008
132008
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