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Diogo Borges Lima
Diogo Borges Lima
Leibniz-Forschungsinstitut für Molekulare Pharmakologie (FMP)
Verified email at fmp-berlin.de - Homepage
Title
Cited by
Cited by
Year
Integrated analysis of shotgun proteomic data with PatternLab for proteomics 4.0
PC Carvalho, DB Lima, FV Leprevost, MDM Santos, JSG Fischer, ...
Nature protocols 11 (1), 102-117, 2016
2542016
SIM-XL: A powerful and user-friendly tool for peptide cross-linking analysis
DB Lima, TB de Lima, TS Balbuena, AGC Neves-Ferreira, VC Barbosa, ...
Journal of proteomics 129, 51-55, 2015
1032015
Characterization of homodimer interfaces with cross-linking mass spectrometry and isotopically labeled proteins
DB Lima, JT Melchior, J Morris, VC Barbosa, J Chamot-Rooke, ...
Nature protocols 13 (3), 431-458, 2018
552018
PepExplorer: a similarity-driven tool for analyzing de novo sequencing results
FV Leprevost, RH Valente, DB Lima, J Perales, R Melani, JR Yates, ...
Molecular & Cellular Proteomics 13 (9), 2480-2489, 2014
442014
Simple, efficient and thorough shotgun proteomic analysis with PatternLab V
MDM Santos, DB Lima, JSG Fischer, MA Clasen, LU Kurt, ...
Nature protocols 17 (7), 1553-1578, 2022
352022
XPlex: An effective, multiplex cross-linking chemistry for acidic residues
M Fioramonte, HCR de Jesus, AJR Ferrari, DB Lima, RL Drekener, ...
Analytical chemistry 90 (10), 6043-6050, 2018
292018
Comparative proteomic analysis of the aging soleus and extensor digitorum longus rat muscles using TMT labeling and mass spectrometry
DFS Chaves, PC Carvalho, DB Lima, H Nicastro, FM Lorenzeti, ...
Journal of proteome research 12 (10), 4532-4546, 2013
282013
Optimization of a top-down proteomics platform for closely related pathogenic bacterial discrimination
M Dupré, M Duchateau, C Malosse, D Borges-Lima, V Calvaresi, ...
Journal of Proteome Research 20 (1), 202-211, 2020
272020
An evaluation of the crystal structure of C-terminal truncated apolipoprotein AI in solution reveals structural dynamics related to lipid binding
JT Melchior, RG Walker, J Morris, MK Jones, JP Segrest, DB Lima, ...
Journal of Biological Chemistry 291 (10), 5439-5451, 2016
232016
Effectively addressing complex proteomic search spaces with peptide spectrum matching
D Borges, Y Perez-Riverol, FCS Nogueira, GB Domont, J Noda, ...
Bioinformatics 29 (10), 1343-1344, 2013
222013
Exploring the proteomic landscape of a gastric cancer biopsy with the shotgun imaging analyzer
PF Aquino, DB Lima, J de Saldanha da Gama Fischer, RD Melani, ...
Journal of proteome research 13 (1), 314-320, 2014
212014
Trypanosoma cruzi immunoproteome: Calpain-like CAP5. 5 differentially detected throughout distinct stages of human Chagas disease cardiomyopathy
MA Caminha, VMB de Lorena, W de Oliveira Júnior, J Perales, ...
Journal of proteomics 194, 179-190, 2019
162019
XlinkCyNET: a cytoscape application for visualization of protein interaction networks based on cross-linking mass spectrometry identifications
DB Lima, Y Zhu, F Liu
Journal of Proteome Research 20 (4), 1943-1950, 2021
132021
Comprehensive identification of protein disulfide bonds with pepsin/trypsin digestion, Orbitrap HCD and Spectrum Identification Machine
C Cui, T Liu, T Chen, J Lu, I Casaren, DB Lima, PC Carvalho, A Beuve, ...
Journal of proteomics 198, 78-86, 2019
132019
Optimized TMT-based quantitative cross-linking mass spectrometry strategy for large-scale interactomic studies
M Ruwolt, L Schnirch, D Borges Lima, M Nadler-Holly, R Viner, F Liu
Analytical chemistry 94 (13), 5265-5272, 2022
122022
RawVegetable–A data assessment tool for proteomics and cross-linking mass spectrometry experiments
LU Kurt, MA Clasen, MDM Santos, TACB Souza, EC Andreassa, EB Lyra, ...
Journal of proteomics 225, 103864, 2020
122020
DiagnoProt: a tool for discovery of new molecules by mass spectrometry
ARF Silva, DB Lima, A Leyva, R Duran, C Batthyany, PF Aquino, JC Leal, ...
Bioinformatics 33 (12), 1883-1885, 2017
92017
Pinpointing differentially expressed domains in complex protein mixtures with the cloud service of PatternLab for Proteomics
FV Leprevost, DB Lima, J Crestani, Y Perez-Riverol, N Zanchin, ...
Journal of proteomics 89, 179-182, 2013
92013
Quantitative proteomic map of the trypanosomatid Strigomonas culicis: the biological contribution of its endosymbiotic bacterium
GVF Brunoro, RFS Menna-Barreto, AS Garcia-Gomes, C Boucinha, ...
Protist 170 (6), 125698, 2019
82019
HI-bone: a scoring system for identifying phenylisothiocyanate-derivatized peptides based on precursor mass and high intensity fragment ions
Y Perez-Riverol, A Sánchez, J Noda, D Borges, PC Carvalho, R Wang, ...
Analytical chemistry 85 (7), 3515-3520, 2013
82013
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