Diogo Borges Lima
TitleCited byYear
Integrated analysis of shotgun proteomic data with PatternLab for proteomics 4.0
PC Carvalho, DB Lima, FV Leprevost, MDM Santos, JSG Fischer, ...
Nature protocols 11 (1), 102, 2016
892016
SIM-XL: A powerful and user-friendly tool for peptide cross-linking analysis
DB Lima, TB de Lima, TS Balbuena, AGC Neves-Ferreira, VC Barbosa, ...
Journal of proteomics 129, 51-55, 2015
442015
PepExplorer: a similarity-driven tool for analyzing de novo sequencing results
FV Leprevost, RH Valente, DB Lima, J Perales, R Melani, JR Yates, ...
Molecular & Cellular Proteomics 13 (9), 2480-2489, 2014
272014
Comparative proteomic analysis of the aging soleus and extensor digitorum longus rat muscles using TMT labeling and mass spectrometry
DFS Chaves, PC Carvalho, DB Lima, H Nicastro, FM Lorenzeti, ...
Journal of proteome research 12 (10), 4532-4546, 2013
212013
Exploring the proteomic landscape of a gastric cancer biopsy with the shotgun imaging analyzer
PF Aquino, DB Lima, J de Saldanha da Gama Fischer, RD Melani, ...
Journal of proteome research 13 (1), 314-320, 2013
202013
Effectively addressing complex proteomic search spaces with peptide spectrum matching
D Borges, Y Perez-Riverol, FCS Nogueira, GB Domont, J Noda, ...
Bioinformatics 29 (10), 1343-1344, 2013
192013
An evaluation of the crystal structure of C-terminal truncated apolipoprotein AI in solution reveals structural dynamics related to lipid binding
JT Melchior, RG Walker, J Morris, MK Jones, JP Segrest, DB Lima, ...
Journal of Biological Chemistry 291 (10), 5439-5451, 2016
162016
Characterization of homodimer interfaces with cross-linking mass spectrometry and isotopically labeled proteins
DB Lima, JT Melchior, J Morris, VC Barbosa, J Chamot-Rooke, ...
Nature protocols 13 (3), 431, 2018
102018
XPlex: an effective, multiplex cross-linking chemistry for acidic residues
M Fioramonte, HCR de Jesus, AJR Ferrari, DB Lima, RL Drekener, ...
Analytical chemistry 90 (10), 6043-6050, 2018
82018
Pinpointing differentially expressed domains in complex protein mixtures with the cloud service of PatternLab for Proteomics
FV Leprevost, DB Lima, J Crestani, Y Perez-Riverol, N Zanchin, ...
Journal of proteomics 89, 179-182, 2013
82013
HI-bone: a scoring system for identifying phenylisothiocyanate-derivatized peptides based on precursor mass and high intensity fragment ions
Y Perez-Riverol, A Sánchez, J Noda, D Borges, PC Carvalho, R Wang, ...
Analytical chemistry 85 (7), 3515-3520, 2013
72013
Using SIM-XL to identify and annotate cross-linked peptides analyzed by mass spectrometry
D Borges
Protoc. Exch, 2015
62015
The influence of iron on the proteomic profile of Chromobacterium violaceum
DC Lima, FT Duarte, VKS Medeiros, DB Lima, PC Carvalho, D Bonatto, ...
BMC microbiology 14 (1), 267, 2014
62014
DiagnoProt: a tool for discovery of new molecules by mass spectrometry
ARF Silva, DB Lima, A Leyva, R Duran, C Batthyany, PF Aquino, JC Leal, ...
Bioinformatics 33 (12), 1883-1885, 2017
32017
Comprehensive identification of protein disulfide bonds with pepsin/trypsin digestion, Orbitrap HCD and Spectrum Identification Machine
C Cui, T Liu, T Chen, J Lu, I Casaren, DB Lima, PC Carvalho, A Beuve, ...
Journal of proteomics 198, 78-86, 2019
22019
Trypanosoma cruzi immunoproteome: Calpain-like CAP5. 5 differentially detected throughout distinct stages of human Chagas disease cardiomyopathy
MA Caminha, VMB de Lorena, W de Oliveira Júnior, J Perales, ...
Journal of proteomics 194, 179-190, 2019
12019
Método computacional para identificação de peptídeos marcados com fenil-isotiocianato e analisados por cromatografia líquida acoplada a espectrometria de massa em tandem
DB Lima, FMG FRANÇA, PC CARVALHO
Rio de Janeiro: Federal University of Rio de Janeiro, 2013
12013
Redução do acoplamento com frameworks específicos de plataforma no MDARTE: Estudo de caso em ambientes móveis
DB Lima, DB Lima, E de Souza Oliveira
Acesso em, 0
1
A quantitation module for isotope-labeled peptides integrated into PatternLab for proteomics
MDM Santos, DB Lima, ARF Silva, LU Kurt, MA Clasen, AFM Pinto, ...
Journal of proteomics 202, 103371, 2019
2019
Structural analysis of a myotoxin-antimyotoxin complex by cross-linking, mass spectrometry, and bioinformatics
BS Soares, SLG da Rocha, DB Lima, M Fioramonte, FC Gozzo, ...
Toxicon 158, S29-S30, 2019
2019
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Articles 1–20