Yli-Harja
Yli-Harja
Faculty of Biomedicine
Verified email at tuni.fi
Title
Cited by
Cited by
Year
Analysis of the properties of median and weighted median filters using threshold logic and stack filter representation
O Yli-Harja, J Astola, Y Neuvo
IEEE Transactions on Signal Processing 39 (2), 395-410, 1991
4231991
On learning gene regulatory networks under the Boolean network model
H Lähdesmäki, I Shmulevich, O Yli-Harja
Machine learning 52 (1), 147-167, 2003
3042003
Software for quantification of labeled bacteria from digital microscope images by automated image analysis
J Selinummi, J Seppälä, O Yli-Harja, JA Puhakka
Biotechniques 39 (6), 859-863, 2005
2802005
High-resolution DNA analysis of human embryonic stem cell lines reveals culture-induced copy number changes and loss of heterozygosity
E Närvä, R Autio, N Rahkonen, L Kong, N Harrison, D Kitsberg, ...
Nature biotechnology 28 (4), 371-377, 2010
2732010
Gene expression dynamics in the macrophage exhibit criticality
M Nykter, ND Price, M Aldana, SA Ramsey, SA Kauffman, LE Hood, ...
Proceedings of the National Academy of Sciences 105 (6), 1897-1900, 2008
2402008
The tumorigenic FGFR3-TACC3 gene fusion escapes miR-99a regulation in glioblastoma
BC Parker, MJ Annala, DE Cogdell, KJ Granberg, Y Sun, P Ji, X Li, ...
The Journal of clinical investigation 123 (2), 2013
2092013
Computational framework for simulating fluorescence microscope images with cell populations
A Lehmussola, P Ruusuvuori, J Selinummi, H Huttunen, O Yli-Harja
IEEE transactions on medical imaging 26 (7), 1010-1016, 2007
2082007
Robust quantification of in vitro angiogenesis through image analysis
A Niemisto, V Dunmire, O Yli-Harja, W Zhang, I Shmulevich
IEEE transactions on medical imaging 24 (4), 549-553, 2005
1972005
A review of connectivity map and computational approaches in pharmacogenomics
A Musa, LS Ghoraie, SD Zhang, G Glazko, O Yli-Harja, M Dehmer, ...
Briefings in bioinformatics 19 (3), 506-523, 2018
1752018
Robust detection of periodic time series measured from biological systems
M Ahdesmäki, H Lähdesmäki, R Pearson, H Huttunen, O Yli-Harja
BMC bioinformatics 6 (1), 1-18, 2005
1512005
CGH-Plotter: MATLAB toolbox for CGH-data analysis
R Autio, S Hautaniemi, P Kauraniemi, O Yli-Harja, J Astola, M Wolf, ...
Bioinformatics 19 (13), 1714-1715, 2003
1412003
Perturbation avalanches and criticality in gene regulatory networks
P Rämö, J Kesseli, O Yli-Harja
Journal of Theoretical Biology 242 (1), 164-170, 2006
1362006
Global Gene Expression Profile of Human Cord Blood–Derived CD133+ Cells
T Jaatinen, H Hemmoranta, S Hautaniemi, J Niemi, D Nicorici, J Laine, ...
Stem cells 24 (3), 631-641, 2006
1342006
Relationships between probabilistic Boolean networks and dynamic Bayesian networks as models of gene regulatory networks
H Lähdesmäki, S Hautaniemi, I Shmulevich, O Yli-Harja
Signal processing 86 (4), 814-834, 2006
1282006
Critical networks exhibit maximal information diversity in structure-dynamics relationships
M Nykter, ND Price, A Larjo, T Aho, SA Kauffman, O Yli-Harja, ...
Physical review letters 100 (5), 058702, 2008
1062008
Evaluation of methods for detection of fluorescence labeled subcellular objects in microscope images
P Ruusuvuori, T Äijö, S Chowdhury, C Garmendia-Torres, J Selinummi, ...
BMC bioinformatics 11 (1), 1-17, 2010
992010
Differential gene expression in adipose stem cells cultured in allogeneic human serum versus fetal bovine serum
B Lindroos, KL Aho, H Kuokkanen, S Räty, H Huhtala, R Lemponen, ...
Tissue Engineering Part A 16 (7), 2281-2294, 2010
972010
Bright field microscopy as an alternative to whole cell fluorescence in automated analysis of macrophage images
J Selinummi, P Ruusuvuori, I Podolsky, A Ozinsky, E Gold, O Yli-Harja, ...
PloS one 4 (10), e7497, 2009
962009
Simulation of microarray data with realistic characteristics
M Nykter, T Aho, M Ahdesmäki, P Ruusuvuori, A Lehmussola, O Yli-Harja
BMC bioinformatics 7 (1), 1-17, 2006
912006
Genomically amplified Akt3 activates DNA repair pathway and promotes glioma progression
KM Turner, Y Sun, P Ji, KJ Granberg, B Bernard, L Hu, DE Cogdell, ...
Proceedings of the National Academy of Sciences 112 (11), 3421-3426, 2015
902015
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