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Rommel Ramos
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Evidence for reductive genome evolution and lateral acquisition of virulence functions in two Corynebacterium pseudotuberculosis strains
JC Ruiz, V D'Afonseca, A Silva, A Ali, AC Pinto, AR Santos, AAMC Rocha, ...
PloS one 6 (4), e18551, 2011
1122011
The pan-genome of the animal pathogen Corynebacterium pseudotuberculosis reveals differences in genome plasticity between the biovar ovis and equi strains
SC Soares, A Silva, E Trost, J Blom, R Ramos, A Carneiro, A Ali, ...
PLoS One 8 (1), e53818, 2013
1102013
GIPSy: genomic island prediction software
SC Soares, H Geyik, RTJ Ramos, PHCG de Sá, EGV Barbosa, ...
Journal of Biotechnology 232, 2-11, 2016
1012016
Inside the pan-genome-methods and software overview
L Carlos Guimaraes, L Benevides de Jesus, M Vinicius Canario Viana, ...
Current genomics 16 (4), 245-252, 2015
832015
GO FEAT: a rapid web-based functional annotation tool for genomic and transcriptomic data
FA Araujo, D Barh, A Silva, L Guimaraes, RTJ Ramos
Scientific reports 8 (1), 1-4, 2018
762018
PIPS: Pathogenicity Island Prediction Software
SC Soares, VAC Abreu, RTJ Ramos, L Cerdeira, A Silva, J Baumbach, ...
PloS one 7 (2), e30848, 2012
762012
Exoproteome and Secretome Derived Broad Spectrum Novel Drug and Vaccine Candidates in Vibrio cholerae Targeted by Piper betel Derived Compounds
D Barh, N Barve, K Gupta, S Chandra, N Jain, S Tiwari, N Leon-Sicairos, ...
PloS one 8 (1), e52773, 2013
662013
Complete Genome Sequence of Corynebacterium pseudotuberculosis I19, a Strain Isolated from a Cow in Israel with Bovine Mastitis
A Silva, MPC Schneider, L Cerdeira, MS Barbosa, RTJ Ramos, ...
Journal of bacteriology 193 (1), 323-324, 2011
632011
Genome sequence of Exiguobacterium antarcticum B7, isolated from a biofilm in Ginger Lake, King George Island, Antarctica
AR Carneiro, RTJ Ramos, H Dall'Agnol, AC Pinto, S de Castro Soares, ...
Journal of bacteriology 194 (23), 6689-6690, 2012
622012
High-throughput sequencing of black pepper root transcriptome
S Gordo, DG Pinheiro, ECO Moreira, SM Rodrigues, MC Poltronieri, ...
BMC plant biology 12 (1), 1-9, 2012
622012
Campylobacter fetus subspecies: Comparative genomics and prediction of potential virulence targets
A Ali, SC Soares, AR Santos, LC Guimarães, E Barbosa, SS Almeida, ...
Gene 508 (2), 145-156, 2012
592012
Genome sequence of Corynebacterium pseudotuberculosis biovar equi strain 258 and prediction of antigenic targets to improve biotechnological vaccine production
SC Soares, E Trost, RTJ Ramos, AR Carneiro, AR Santos, AC Pinto, ...
Journal of biotechnology 167 (2), 135-141, 2013
542013
Pan-genome analysis of human gastric pathogen H. pylori: comparative genomics and pathogenomics approaches to identify regions associated with pathogenicity and prediction of …
A Ali, A Naz, SC Soares, M Bakhtiar, S Tiwari, SS Hassan, F Hanan, ...
BioMed research international 2015, 2015
532015
Jazigos Filonianos Hidrotermais e Aplitopegmatíticos Espacialmente Associados a Granitos (Norte de Portugal).
F Noronha, MA Ribeiro, A Almeida, A Dória, A Guedes, A Lima, ...
Geologia de Portugal, 2013
502013
Rapid hybrid de novo assembly of a microbial genome using only short reads: Corynebacterium pseudotuberculosis I19 as a case study
LT Cerdeira, AR Carneiro, RTJ Ramos, SS de Almeida, MPC Schneider, ...
Journal of Microbiological Methods 86 (2), 218-223, 2011
482011
Differential transcriptional profile of Corynebacterium pseudotuberculosis in response to abiotic stresses
AC Pinto, PHCG de Sá, RTJ Ramos, S Barbosa, HPM Barbosa, ...
BMC genomics 15 (1), 1-14, 2014
472014
Molecular characterisation of dengue virus type 1 reveals lineage replacement during circulation in Brazilian territory
AR Carneiro, ACR Cruz, M Vallinoto, DV Melo, RTJ Ramos, ...
Memorias do Instituto Oswaldo Cruz 107, 805-812, 2012
412012
The Detection and Sequencing of a Broad-Host-Range Conjugative IncP-1β Plasmid in an Epidemic Strain of Mycobacterium abscessus subsp. bolletii
SC Leao, CK Matsumoto, A Carneiro, RT Ramos, CL Nogueira, ...
PLoS One 8 (4), e60746, 2013
372013
Complete genome sequence of Streptococcus agalactiae strain SA20-06, a fish pathogen associated to meningoencephalitis outbreaks
U de Pádua Pereira, AR Dos Santos, SS Hassan, FF Aburjaile, ...
Standards in genomic sciences 8 (2), 188-197, 2013
342013
Analysis of quality raw data of second generation sequencers with Quality Assessment Software
R Ramos, A Carneiro, J Baumbach, V Azevedo, M Schneider, A Silva
BMC research notes 4 (1), 130, 2011
322011
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