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Esteban Dodero-Rojas
Esteban Dodero-Rojas
Postdoctoral Researcher at St Jude Children's Research Hospital
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Year
Design and proof of concept for targeted phage-based COVID-19 vaccination strategies with a streamlined cold-free supply chain
DI Staquicini, FHF Tang, C Markosian, VJ Yao, FI Staquicini, ...
Proceedings of the national academy of sciences 118 (30), e2105739118, 2021
512021
Sterically confined rearrangements of SARS-CoV-2 Spike protein control cell invasion
E Dodero-Rojas, JN Onuchic, PC Whitford
Elife 10, e70362, 2021
432021
The Nucleome Data Bank: web-based resources to simulate and analyze the three-dimensional genome
VG Contessoto, RR Cheng, A Hajitaheri, E Dodero-Rojas, MF Mello, ...
Nucleic Acids Research 49 (D1), D172-D182, 2021
282021
SMOG 2 and OpenSMOG: Extending the limits of structure‐based models
AB de Oliveira Jr, VG Contessoto, A Hassan, S Byju, A Wang, Y Wang, ...
Protein Science 31 (1), 158-172, 2022
212022
On twin peak quasi-periodic oscillations resulting from the interaction between discoseismic modes and turbulence in accretion discs around black holes
M Ortega-Rodríguez, H Solís-Sánchez, L Álvarez-García, E Dodero-Rojas
Monthly Notices of the Royal Astronomical Society 492 (2), 1755-1760, 2020
192020
Modeling Chikungunya control strategies and Mayaro potential outbreak in the city of Rio de Janeiro
E Dodero-Rojas, LG Ferreira, VBP Leite, JN Onuchic, VG Contessoto
PloS one 15 (1), e0222900, 2020
132020
Genetic and structural analysis of SARS-CoV-2 spike protein for universal epitope selection
C Markosian, DI Staquicini, P Dogra, E Dodero-Rojas, JH Lubin, ...
Molecular biology and evolution 39 (5), msac091, 2022
102022
PyMEGABASE: predicting cell-type-specific structural annotations of chromosomes using the epigenome
E Dodero-Rojas, MF Mello, S Brahmachari, ABO Junior, VG Contessoto, ...
Journal of Molecular Biology 435 (15), 168180, 2023
62023
Apropos of Universal Epitope Discovery for COVID-19 Vaccines: A Framework for Targeted Phage Display-Based Delivery and Integration of New Evaluation Tools
C Markosian, DI Staquicini, P Dogra, E Dodero-Rojas, FHF Tang, ...
Biorxiv, 2021
32021
Structure and inhibition of SARS-CoV-2 spike refolding in membranes
MW Grunst, Z Qin, E Dodero-Rojas, S Ding, J Prévost, Y Chen, Y Hu, ...
Science 385 (6710), 757-765, 2024
22024
Exploring the structure-function relationship of biomacromolecules: simulation and prediction of structural behavior of viral proteins and chromatin
E Dodero Rojas
2024
Investigating human chromosome organization by whole-genome simulations
MF Mello, AB Oliveira, E Dodero-Rojas, S Brahmachari, VG Contessoto, ...
Biophysical Journal 123 (3), 366a, 2024
2024
Epigenetics is all you need: A Transformer to decode chromatin structural compartments from the epigenome
E Dodero-Rojas, VG Contessoto, Y Fehlis, N Malaya, J Onuchic
bioRxiv, 2024.07. 17.603864, 2024
2024
Phase separation of AB compartments are modulated by lamina-chromatin interaction
E Dodero-Rojas, V Contessoto, MF Mello, JN Onuchic
Biophysical Journal 122 (3), 494a, 2023
2023
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