Rasmus Fonseca
Rasmus Fonseca
Zoox inc
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Title
Cited by
Cited by
Year
Structural insights into the activation of metabotropic glutamate receptors
A Koehl, H Hu, D Feng, B Sun, Y Zhang, MJ Robertson, M Chu, ...
Nature 566 (7742), 79-84, 2019
1442019
Conformational transitions of a neurotensin receptor 1–G i1 complex
HE Kato, Y Zhang, H Hu, CM Suomivuori, FMN Kadji, J Aoki, KK Kumar, ...
Nature 572 (7767), 80-85, 2019
982019
Diverse GPCRs exhibit conserved water networks for stabilization and activation
AJ Venkatakrishnan, AK Ma, R Fonseca, NR Latorraca, B Kelly, RM Betz, ...
Proceedings of the National Academy of Sciences 116 (8), 3288-3293, 2019
702019
Characterizing RNA ensembles from NMR data with kinematic models
R Fonseca, DV Pachov, J Bernauer, H van den Bedem
Nucleic acids research 42 (15), 9562-9572, 2014
282014
qFit-ligand Reveals Widespread Conformational Heterogeneity of Drug-Like Molecules in X-Ray Electron Density Maps
GCP van Zundert, BM Hudson, SHP de Oliveira, DA Keedy, R Fonseca, ...
Journal of medicinal chemistry 61 (24), 11183-11198, 2018
272018
Protein structure prediction using bee colony optimization metaheuristic
R Fonseca, M Paluszewski, P Winter
Journal of Mathematical Modelling and Algorithms 9 (2), 181-194, 2010
222010
Predicting dihedral angle probability distributions for protein coil residues from primary sequence using neural networks
G Helles, R Fonseca
BMC bioinformatics 10 (1), 1-8, 2009
172009
Faster exact algorithm for computing Steiner trees in higher dimensional Euclidean spaces
R Fonseca, M Brazil, P Winter, M Zachariasen
11th DIMACS Implementation Challenge Workshop, 2014
162014
Ranking beta sheet topologies with applications to protein structure prediction
R Fonseca, G Helles, P Winter
Journal of Mathematical Modelling and Algorithms 10 (4), 357-369, 2011
142011
Coupled Motions in β2AR:Gαs Conformational Ensembles
DV Pachov, R Fonseca, D Arnol, J Bernauer, H van den Bedem
Journal of chemical theory and computation 12 (3), 946-956, 2016
132016
Frustration‐guided motion planning reveals conformational transitions in proteins
D Budday, R Fonseca, S Leyendecker, H van den Bedem
Proteins: Structure, Function, and Bioinformatics 85 (10), 1795-1807, 2017
82017
Uncovering patterns of atomic interactions in static and dynamic structures of proteins
AJ Venkatakrishnan, R Fonseca, AK Ma, SA Hollingsworth, ...
bioRxiv, 840694, 2019
72019
Collision‐free poisson motion planning in ultra high‐dimensional molecular conformation spaces
R Fonseca, D Budday, H van den Bedem
Journal of computational chemistry 39 (12), 711-720, 2018
72018
KGSrna: efficient 3D kinematics-based sampling for nucleic acids
R Fonseca, H van den Bedem, J Bernauer
International Conference on Research in Computational Molecular Biology, 80-95, 2015
62015
Bounding volumes for proteins: a comparative study
R Fonseca, P Winter
Journal of Computational Biology 19 (10), 1203-1213, 2012
62012
Fast, clash-free RNA conformational morphing using molecular junctions
A Héliou, D Budday, R Fonseca, H van den Bedem
Bioinformatics 33 (14), 2114-2122, 2017
52017
Steiner tree heuristics in Euclidean d-space
A Olsen, S Lorenzen, R Fonseca, P Winter
Proc. of the 11th DIMACS Implementation Challenge, 2014
52014
Stable networks of water-mediated interactions are conserved in activation of diverse GPCRs
AJ Venkatakrishnan, AK Ma, R Fonseca, NR Latorraca, B Kelly, RM Betz, ...
BioRxiv, 351502, 2018
42018
Driving Structural Transitions in Molecular Simulations Using the Nonequilibrium Candidate Monte Carlo
A Kurut, R Fonseca, W Boomsma
The Journal of Physical Chemistry B 122 (3), 1195-1204, 2017
42017
Probing RNA native conformational ensembles with structural constraints
R Fonseca, H van den Bedem, J Bernauer
Journal of Computational Biology 23 (5), 362-371, 2016
42016
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Articles 1–20