Zied Gaieb
Zied Gaieb
Postdoctoral Scholar
Verified email at ucsd.edu
Title
Cited by
Cited by
Year
D3R Grand Challenge 2: blind prediction of protein–ligand poses, affinity rankings, and relative binding free energies
Z Gaieb, S Liu, S Gathiaka, M Chiu, H Yang, C Shao, VA Feher, ...
Journal of computer-aided molecular design 32 (1), 1-20, 2018
1202018
Beyond Shielding: The Roles of Glycans in the SARS-CoV-2 Spike Protein
L Casalino, Z Gaieb, JA Goldsmith, CK Hjorth, AC Dommer, AM Harbison, ...
ACS Central Science, 2020
106*2020
D3R Grand Challenge 3: blind prediction of protein–ligand poses and affinity rankings
Z Gaieb, CD Parks, M Chiu, H Yang, C Shao, WP Walters, MH Lambert, ...
Journal of computer-aided molecular design 33 (1), 1-18, 2019
642019
D3R grand challenge 4: blind prediction of protein–ligand poses, affinity rankings, and relative binding free energies
CD Parks, Z Gaieb, M Chiu, H Yang, C Shao, WP Walters, JM Jansen, ...
Journal of Computer-Aided Molecular Design 34 (2), 99-119, 2020
152020
Molecular Mechanism of Biased Ligand Conformational Changes in CC Chemokine Receptor 7
Z Gaieb, DD Lo, D Morikis
Journal of Chemical Information and Modeling 56 (9), 1808-1822, 2016
122016
A multiscale coarse-grained model of the SARS-CoV-2 virion
A Yu, AJ Pak, P He, V Monje-Galvan, L Casalino, Z Gaieb, AC Dommer, ...
Biophysical journal, 2020
112020
The flexibility of ACE2 in the context of SARS-CoV-2 infection
EP Barros, L Casalino, Z Gaieb, AC Dommer, Y Wang, L Fallon, ...
Biophysical Journal, 2020
112020
Simulations support the interaction of the SARS-CoV-2 spike protein with nicotinic acetylcholine receptors and suggest subtype specificity
AS Oliveira, AA Ibarra, I Bermudez, L Casalino, Z Gaieb, DK Shoemark, ...
bioRxiv, 2020
102020
Detection of Side Chain Rearrangements Mediating the Motions of Transmembrane Helices in Molecular Dynamics Simulations of G Protein-Coupled Receptors
Z Gaieb, D Morikis
Computational and Structural Biotechnology Journal 15, 131-137, 2017
62017
AI-Driven Multiscale Simulations Illuminate Mechanisms of SARS-CoV-2 Spike Dynamics
L Casalino, AC Dommer, Z Gaieb, EP Barros, T Sztain, SH Ahn, A Trifan, ...
bioRxiv, 2020
42020
Conformational heterogeneity in CCR7 undergoes transitions to specific states upon ligand binding
Z Gaieb, D Morikis
Journal of Molecular Graphics and Modelling 74, 352-358, 2017
32017
An Analysis of Proteochemometric and Conformal Prediction Machine Learning Protein-Ligand Binding Affinity Models
C Parks, Z Gaieb, RE Amaro
Frontiers in molecular biosciences 7, 93, 2020
12020
Machine learning for acute oral system toxicity regression and classification
C Parks, Z Gaieb, R Amaro
ChemRxiv. doi 10, 2019
12019
Dual Inhibitors of Cyclooxygenase‐2 and Soluble Epoxide Hydrolase: Studies of Binding Modes at the Active Sites and Time‐dependency of Inhibition, and Development of Water …
SH Hwang, Z Gaieb, C Morisseau, J Yang, K Wagner, MK Gilson, ...
The FASEB Journal 32, 558.2-558.2, 2018
12018
Molecular Switches Coordinate Dynamically Coupled Allosteric Networks in Protein Complexes
Z Gaieb
UNIVERSITY OF CALIFORNIA, RIVERSIDE, 2016
12016
Electrostatic Interactions between Complement Regulator CD46 (SCR1-2) and Adenovirus Ad11/Ad21 Fiber Protein Knob
CZ Chen, RD Gorham, Z Gaieb, D Morikis
Molecular biology international 2015, 2015
12015
SARS-CoV-2 Glycosylated Spike Activation Mechanism-Simulations of the Full Unbiased Pathway
T Sztain-Pedone, SH Ahn, A Bogetti, L Casalino, Z Gaieb, JA McCammon, ...
Biophysical Journal 120 (3), 276a, 2021
2021
Simulations support the interaction of the SARS-CoV-2 spike protein with nicotinic acetylcholine receptors
AS F. Oliveira, AA Ibarra, I Bermudez, L Casalino, Z Gaieb, DK Shoemark, ...
bioRxiv, 2020.07. 16.206680, 2020
2020
Disease related mutations in PI3Kγ disrupt regulatory C-terminal dynamics and reveals a path to selective inhibitors
MK Rathinaswamy, Z Gaieb, KD Fleming, C Borsari, NJ Harris, ...
bioRxiv, 2020
2020
Comparison of commonly used solid tumor targeted gene sequencing panels for estimating tumor mutation burden shows analytical and prognostic concordance within the cancer …
N Bevins, S Sun, Z Gaieb, JA Thorson, SS Murray
Journal for Immunotherapy of Cancer 8 (1), 2020
2020
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Articles 1–20