Mark Bathe
Mark Bathe
Biological Engineering, MIT
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A primer to scaffolded DNA origami
CE Castro, F Kilchherr, DN Kim, EL Shiao, T Wauer, P Wortmann, ...
Nature methods 8 (3), 221-229, 2011
Designer nanoscale DNA assemblies programmed from the top down
R Veneziano, S Ratanalert, K Zhang, F Zhang, H Yan, W Chiu, M Bathe
Science 352 (6293), 1534-1534, 2016
Quantitative prediction of 3D solution shape and flexibility of nucleic acid nanostructures
DN Kim, F Kilchherr, H Dietz, M Bathe
Nucleic acids research 40 (7), 2862-2868, 2012
Actin-binding proteins sensitively mediate F-actin bundle stiffness
MMAE Claessens, M Bathe, E Frey, AR Bausch
Nature materials 5 (9), 748-753, 2006
Casting inorganic structures with DNA molds
W Sun, E Boulais, Y Hakobyan, WL Wang, A Guan, M Bathe, P Yin
Science 346 (6210), 2014
A fluid-structure interaction finite element analysis of pulsatile blood flow through a compliant stenotic artery
M Bathe, RD Kamm
Journal of biomechanical engineering 121 (4), 361-369, 1999
The kinetochore-bound Ska1 complex tracks depolymerizing microtubules and binds to curved protofilaments
JC Schmidt, H Arthanari, A Boeszoermenyi, NM Dashkevich, ...
Developmental cell 23 (5), 968-980, 2012
Cytoskeletal bundle mechanics
M Bathe, C Heussinger, MMAE Claessens, AR Bausch, E Frey
Biophysical journal 94 (8), 2955-2964, 2008
Statistical mechanics of semiflexible bundles of wormlike polymer chains
C Heussinger, M Bathe, E Frey
Physical review letters 99 (4), 048101, 2007
Bayesian approach to MSD-based analysis of particle motion in live cells
N Monnier, SM Guo, M Mori, J He, P Lénárt, M Bathe
Biophysical journal 103 (3), 616-626, 2012
Programming self-assembly of DNA origami honeycomb two-dimensional lattices and plasmonic metamaterials
P Wang, S Gaitanaros, S Lee, M Bathe, WM Shih, Y Ke
Journal of the American Chemical Society 138 (24), 7733-7740, 2016
A coarse-grained molecular model for glycosaminoglycans: application to chondroitin, chondroitin sulfate, and hyaluronic acid
M Bathe, GC Rutledge, AJ Grodzinsky, B Tidor
Biophysical journal 88 (6), 3870-3887, 2005
Inferring transient particle transport dynamics in live cells
N Monnier, Z Barry, HY Park, KC Su, Z Katz, BP English, A Dey, K Pan, ...
Nature methods 12 (9), 838-840, 2015
Neutrophil transit times through pulmonary capillaries: the effects of capillary geometry and fMLP-stimulation
M Bathe, A Shirai, CM Doerschuk, RD Kamm
Biophysical journal 83 (4), 1917-1933, 2002
Lattice-free prediction of three-dimensional structure of programmed DNA assemblies
K Pan, DN Kim, F Zhang, MR Adendorff, H Yan, M Bathe
Nature communications 5 (1), 1-7, 2014
Mapping translation'hot-spots' in live cells by tracking single molecules of mRNA and ribosomes
ZB Katz, BP English, T Lionnet, YJ Yoon, N Monnier, B Ovryn, M Bathe, ...
Elife 5, e10415, 2016
A finite element framework for computation of protein normal modes and mechanical response
M Bathe
Proteins: Structure, Function, and Bioinformatics 70 (4), 1595-1609, 2008
Designer nucleic acids to probe and program the cell
Y Krishnan, M Bathe
Trends in cell biology 22 (12), 624-633, 2012
Intracellular transport by an anchored homogeneously contracting F-actin meshwork
M Mori, N Monnier, N Daigle, M Bathe, J Ellenberg, P Lénárt
Current Biology 21 (7), 606-611, 2011
Structure, evolutionary conservation, and conformational dynamics of Homo sapiens fascin-1, an F-actin crosslinking protein
RS Sedeh, AA Fedorov, EV Fedorov, S Ono, F Matsumura, SC Almo, ...
Journal of molecular biology 400 (3), 589-604, 2010
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