Medium chain fatty acids are selective peroxisome proliferator activated receptor (PPAR) γ activators and pan-PPAR partial agonists MV Liberato, AS Nascimento, SD Ayers, JZ Lin, A Cvoro, RL Silveira, ... PloS one 7 (5), e36297, 2012 | 116 | 2012 |
GQ-16, a novel peroxisome proliferator-activated receptor γ (PPARγ) ligand, promotes insulin sensitization without weight gain AA Amato, S Rajagopalan, JZ Lin, BM Carvalho, ACM Figueira, J Lu, ... Journal of Biological Chemistry 287 (33), 28169-28179, 2012 | 88 | 2012 |
Molecular mechanism of peroxisome proliferator-activated receptor α activation by WY14643: a new mode of ligand recognition and receptor stabilization A Bernardes, PCT Souza, JRC Muniz, CG Ricci, SD Ayers, NM Parekh, ... Journal of molecular biology 425 (16), 2878-2893, 2013 | 71 | 2013 |
Computational modeling of realistic cell membranes SJ Marrink, V Corradi, PCT Souza, HI Ingólfsson, DP Tieleman, ... Chemical reviews 119 (9), 6184-6226, 2019 | 49 | 2019 |
Analysis of agonist and antagonist effects on thyroid hormone receptor conformation by hydrogen/deuterium exchange ACM Figueira, DM Saidemberg, PCT Souza, L Martínez, TS Scanlan, ... Molecular Endocrinology 25 (1), 15-31, 2011 | 46 | 2011 |
Enhancing Molecular n‐Type Doping of Donor–Acceptor Copolymers by Tailoring Side Chains J Liu, L Qiu, R Alessandri, X Qiu, G Portale, JJ Dong, W Talsma, G Ye, ... Advanced Materials 30 (7), 1704630, 2018 | 44 | 2018 |
CHARMM‐GUI Martini Maker for modeling and simulation of complex bacterial membranes with lipopolysaccharides PC Hsu, BMH Bruininks, D Jefferies, P Cesar Telles de Souza, J Lee, ... Journal of computational chemistry 38 (27), 2354-2363, 2017 | 31 | 2017 |
Identification of a new hormone-binding site on the surface of thyroid hormone receptor PCT Souza, AC Puhl, L Martínez, R Aparício, AS Nascimento, ... Molecular Endocrinology 28 (4), 534-545, 2014 | 29 | 2014 |
Helix 12 dynamics and thyroid hormone receptor activity: experimental and molecular dynamics studies of Ile280 mutants PCT Souza, GB Barra, LFR Velasco, ICJ Ribeiro, LA Simeoni, M Togashi, ... Journal of molecular biology 412 (5), 882-893, 2011 | 18 | 2011 |
CHARMM force field parameterization of rosiglitazone A Hansson, PCT Souza, RL Silveira, L Martínez, MS Skaf International Journal of Quantum Chemistry 111 (7‐8), 1346-1354, 2011 | 16 | 2011 |
Isomeric separation of cannabinoids by UPLC combined with ionic mobility mass spectrometry (TWIM-MS)—Part I LV Tose, NA Santos, RRT Rodrigues, M Murgu, AF Gomes, ... International Journal of Mass Spectrometry 418, 112-121, 2017 | 15 | 2017 |
CHARMM‐based parameterization of neutral articaine—A widely used local anesthetic ÉT Prates, PCT Souza, M Pickholz, MS Skaf International Journal of Quantum Chemistry 111 (7‐8), 1339-1345, 2011 | 12 | 2011 |
High performance collision cross section calculation—HPCCS L Zanotto, G Heerdt, PCT Souza, G Araujo, MS Skaf Journal of computational chemistry 39 (21), 1675-1681, 2018 | 11 | 2018 |
Molecular recognition of PPARγ by kinase CDK5/p25: Insights from a combination of protein–protein docking and adaptive biasing force simulations M Mottin, PCT Souza, MS Skaf The Journal of Physical Chemistry B 119 (26), 8330-8339, 2015 | 9 | 2015 |
On the denaturation mechanisms of the ligand binding domain of thyroid hormone receptors L Martínez, PCT Souza, W Garcia, FAH Batista, RV Portugal, ... The Journal of Physical Chemistry B 114 (3), 1529-1540, 2009 | 6 | 2009 |
An alternative conformation of ERβ bound to estradiol reveals H12 in a stable antagonist position PCT Souza, LC Textor, DC Melo, AS Nascimento, MS Skaf, I Polikarpov Scientific reports 7 (1), 3509, 2017 | 5 | 2017 |
A practical view of the martini force field BMH Bruininks, PCT Souza, SJ Marrink Biomolecular Simulations, 105-127, 2019 | 4 | 2019 |
Pitfalls of the Martini Model R Alessandri, PCT Souza, S Thallmair, MN Melo, AH de Vries, SJ Marrink Journal of Chemical Theory and Computation 15 (10), 5448-5460, 2019 | 3 | 2019 |
TLR4 Recruitment into Lipid Rafts Studied by Coarse Grained MD Simulation PCT Souza, TA Wassenaar, MS Skaf, SJ Marrink Biophysical Journal 114 (3), 72a, 2018 | 1 | 2018 |
CHARMM Force Field Parameterization of Peroxisome Proliferator-Activated Receptor γ Ligands M Mottin, P Souza, C Ricci, M Skaf International journal of molecular sciences 18 (1), 15, 2017 | 1 | 2017 |