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Felix Simkovic
Felix Simkovic
Software Engineer
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Year
The CCP4 suite: integrative software for macromolecular crystallography
J Agirre, M Atanasova, H Bagdonas, CB Ballard, A Baslé, ...
Acta Crystallographica Section D: Structural Biology 79 (6), 449-461, 2023
1232023
Titin kinase is an inactive pseudokinase scaffold that supports MuRF1 recruitment to the sarcomeric M-line
J Bogomolovas, A Gasch, F Simkovic, DJ Rigden, S Labeit, O Mayans
Open biology 4 (5), 140041, 2014
692014
Recent developments in MrBUMP: better search-model preparation, graphical interaction with search models, and solution improvement and assessment
RM Keegan, SJ McNicholas, JMH Thomas, AJ Simpkin, F Simkovic, ...
Acta Crystallographica Section D: Structural Biology 74 (3), 167-182, 2018
412018
Applications of contact predictions to structural biology
F Simkovic, S Ovchinnikov, D Baker, DJ Rigden
IUCrJ 4 (3), 291-300, 2017
412017
SIMBAD: a sequence-independent molecular-replacement pipeline
AJ Simpkin, F Simkovic, JMH Thomas, M Savko, A Lebedev, V Uski, ...
Acta Crystallographica Section D: Structural Biology 74 (7), 595-605, 2018
322018
Production of monodisperse polyurea microcapsules using microfluidics
MF Thorne, F Simkovic, AG Slater
Scientific reports 9 (1), 17983, 2019
272019
Potential DNA binding and nuclease functions of ComEC domains characterized in silico
JA Baker, F Simkovic, HMC Taylor, DJ Rigden
Proteins: Structure, Function, and Bioinformatics 84 (10), 1431-1442, 2016
252016
Mechanistic and functional diversity in the mechanosensory kinases of the titin-like family
O Mayans, GM Benian, F Simkovic, DJ Rigden
Biochemical Society Transactions 41 (4), 1066-1071, 2013
232013
Molecular replacement using structure predictions from databases
AJ Simpkin, JMH Thomas, F Simkovic, RM Keegan, DJ Rigden
Acta Crystallographica Section D: Structural Biology 75 (12), 1051-1062, 2019
182019
Ensembles generated from crystal structures of single distant homologues solve challenging molecular-replacement cases in AMPLE
DJ Rigden, JMH Thomas, F Simkovic, A Simpkin, MD Winn, O Mayans, ...
Acta Crystallographica Section D: Structural Biology 74 (3), 183-193, 2018
172018
Residue contacts predicted by evolutionary covariance extend the application of ab initio molecular replacement to larger and more challenging protein folds
F Simkovic, JMH Thomas, RM Keegan, MD Winn, O Mayans, DJ Rigden
IUCrJ 3 (4), 259-270, 2016
152016
ConKit: a python interface to contact predictions
F Simkovic, JMH Thomas, DJ Rigden
Bioinformatics 33 (14), 2209-2211, 2017
142017
Using Phaser and ensembles to improve the performance of SIMBAD
AJ Simpkin, F Simkovic, JMH Thomas, M Savko, A Lebedev, V Uski, ...
Acta Crystallographica Section D: Structural Biology 76 (1), 1-8, 2020
62020
Approaches to ab initio molecular replacement of α-helical transmembrane proteins
JMH Thomas, F Simkovic, R Keegan, O Mayans, C Zhang, Y Zhang, ...
Acta Crystallographica Section D: Structural Biology 73 (12), 985-996, 2017
62017
MS11-P03| SIMBAD: STRUCTURE BASED SEARCH MODEL IDENTIFICATION FOR MOLECULAR REPLACEMENT USING THE PDB DATABASE.
A Simpkin, F Simkovic, J Thomas, V Uski, M Wojdyr, C Ballard, ...
Acta Cryst 75, e177, 2019
2019
Ensembling for molecular replacement: making the most of your distant homologues
R Keegan, D Rigden, S McNicholas, E Krissinel, J Thomas, A Simpkin, ...
Acta Crystallographica Section A: Foundations and Advances 74, e176-e176, 2018
2018
Exploiting residue–residue contact information beyond structure predictions in molecular replacement
F Simkovic, S de Oliveira, C Deane, DJ Rigden
Acta Crystallographica Section A: Foundations and Advances 74, e46-e46, 2018
2018
Identification of contaminants with SIMBAD: A Sequence-independent molecular replacement pipeline
A Simpkin, F Simkovic, J Thomas, M Savko, C Ballard, M Wojdyr, ...
ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES 74, E172-E172, 2018
2018
Covariation-derived residue contacts in template-free modelling and Molecular Replacement
F Simkovic
PQDT-Global, 2018
2018
Unconventional molecular replacement for helical transmembrane proteins using AMPLE
F Simkovic, J Thomas, O Mayans, D Rigden
Acta Crystallographica Section A: Foundations and Advances 73, C882-C882, 2017
2017
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Articles 1–20