Michael R. Crusoe
Michael R. Crusoe
Common Workflow Language project, and others
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Citado por
The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2018 update
E Afgan, D Baker, B Batut, M Van Den Beek, D Bouvier, M Čech, J Chilton, ...
Nucleic acids research 46 (W1), W537-W544, 2018
MGnify: the microbiome analysis resource in 2020
AL Mitchell, A Almeida, M Beracochea, M Boland, J Burgin, G Cochrane, ...
Nucleic acids research 48 (D1), D570-D578, 2020
The khmer software package: enabling efficient nucleotide sequence analysis
MR Crusoe, HF Alameldin, S Awad, E Boucher, A Caldwell, R Cartwright, ...
F1000Research 4, 2015
Common Workflow Language v1.0
P Amstutz, MR Crusoe, N Tijanić, B Chapman, J Chilton, M Heuer, ...
FigShare, 2016
FAIR computational workflows
C Goble, S Cohen-Boulakia, S Soiland-Reyes, D Garijo, Y Gil, MR Crusoe, ...
Data Intelligence 2 (1-2), 108-121, 2020
Methods included: Standardizing computational reuse and portability with the Common Workflow Language.
MR Crusoe, S Abeln, A Iosup, P Amstutz, J Chilton, N Tijanić, H Ménager, ...
Communications of the ACM 65 (6), 54-63, 2022
Sharing interoperable workflow provenance: A review of best practices and their practical application in CWLProv
FZ Khan, S Soiland-Reyes, RO Sinnott, A Lonie, C Goble, MR Crusoe
GigaScience 8 (11), giz095, 2019
Recommendations for the packaging and containerizing of bioinformatics software
B Gruening, O Sallou, P Moreno, F da Veiga Leprevost, H Ménager, ...
F1000Research 7, 2018
Comparative genomics reveals accelerated evolution in conserved pathways during the diversification of anole lizards
M Tollis, ED Hutchins, J Stapley, SM Rupp, WL Eckalbar, I Maayan, ...
Genome Biology and Evolution 10 (2), 489-506, 2018
Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics
S Baichoo, Y Souilmi, S Panji, G Botha, A Meintjes, S Hazelhurst, ...
BMC bioinformatics 19, 1-13, 2018
Enabling precision medicine via standard communication of HTS provenance, analysis, and results
G Alterovitz, D Dean, C Goble, MR Crusoe, S Soiland-Reyes, A Bell, ...
PLoS biology 16 (12), e3000099, 2018
Scalable workflows and reproducible data analysis for genomics
F Strozzi, R Janssen, R Wurmus, MR Crusoe, G Githinji, P Di Tommaso, ...
Evolutionary Genomics: Statistical and Computational Methods, 723-745, 2019
Robust Cross-Platform Workflows: How Technical and Scientific Communities Collaborate to Develop, Test and Share Best Practices for Data Analysis
S Möller, SW Prescott, L Wirzenius, P Reinholdtsen, B Chapman, P Prins, ...
Data Science and Engineering, 1-13, 2017
Workflows Community Summit: Bringing the Scientific Workflows Community Together
R Ferreira da Silva, H Casanova, K Chard, D Laney, D Ahn, S Jha, ...
arXiv e-prints, arXiv: 2103.09181, 2021
Organizing and running bioinformatics hackathons within Africa: The H3ABioNet cloud computing experience
AE Ahmed, PT Mpangase, S Panji, S Baichoo, Y Souilmi, FM Fadlelmola, ...
AAS Open Research 1, 2018
Workflows community summit 2022: A roadmap revolution
RF da Silva, RM Badia, V Bala, D Bard, PT Bremer, I Buckley, ...
arXiv preprint arXiv:2304.00019, 2023
Existing workflow systems.
P Amstutz
(No Title), 2021
Workflows community summit: Advancing the state-of-the-art of scientific workflows management systems research and development
RF da Silva, H Casanova, K Chard, T Coleman, D Laney, D Ahn, S Jha, ...
arXiv preprint arXiv:2106.05177, 2021
Channeling Community Contributions to Scientific Software: A Sprint Experience
CTB Michael R. Crusoe
Journal of Open Research Software 4, 2016
Walking the talk: adopting and adapting sustainable scientific software development processes in a small biology lab
MR Crusoe, CT Brown
Journal of open research software 4 (1), 2016
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Artigos 1–20