Christoph Flamm
Christoph Flamm
Associate Professor, Department of Theoretical Chemistry, University of Vienna
Verified email at - Homepage
Cited by
Cited by
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
E Birney, JA Stamatoyannopoulos, A Dutta, R Guigó, TR Gingeras, ...
Nature 447 (7146), 799-816, 2007
ViennaRNA Package 2.0
R Lorenz, SH Bernhart, C Höner zu Siederdissen, H Tafer, C Flamm, ...
Algorithms for molecular biology 6, 1-14, 2011
RNA folding at elementary step resolution
C Flamm, W Fontana, IL Hofacker, P Schuster
Rna 6 (3), 325-338, 2000
The expansion of the metazoan microRNA repertoire
J Hertel, M Lindemeyer, K Missal, C Fried, A Tanzer, C Flamm, ...
BMC genomics 7, 1-15, 2006
Partition function and base pairing probabilities of RNA heterodimers
SH Bernhart, H Tafer, U Mückstein, C Flamm, PF Stadler, IL Hofacker
Algorithms for Molecular Biology 1, 1-10, 2006
Barrier trees of degenerate landscapes
C Flamm, IL Hofacker, PF Stadler, MT Wolfinger
Oldenbourg Wissenschaftsverlag GmbH 216 (2), 155, 2002
Design of multistable RNA molecules
C Flamm, IL Hofacker, S Maurer-Stroh, PF Stadler, M Zehl
Rna 7 (2), 254-265, 2001
SBML Level 3: an extensible format for the exchange and reuse of biological models
SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ...
Molecular systems biology 16 (8), e9110, 2020
Automatic detection of conserved RNA structure elements in complete RNA virus genomes
IL Hofacker, M Fekete, C Flamm, MA Huynen, S Rauscher, PE Stolorz, ...
Nucleic acids research 26 (16), 3825-3836, 1998
Inverse problems in systems biology
HW Engl, C Flamm, P Kügler, J Lu, S Müller, P Schuster
Inverse Problems 25 (12), 123014, 2009
Noisy: identification of problematic columns in multiple sequence alignments
AWM Dress, C Flamm, G Fritzsch, S Grünewald, M Kruspe, SJ Prohaska, ...
Algorithms for Molecular Biology 3, 1-10, 2008
Secondary structure of the 3'-noncoding region of flavivirus genomes: comparative analysis of base pairing probabilities.
S Rauscher, C Flamm, CW Mandl, FX Heinz, PF Stadler
Rna 3 (7), 779-791, 1997
The SBML ODE Solver Library: a native API for symbolic and fast numerical analysis of reaction networks
R Machné, A Finney, S Müller, J Lu, S Widder, C Flamm
Bioinformatics 22 (11), 1406-1407, 2006
A graph-based toy model of chemistry
G Benkö, C Flamm, PF Stadler
Journal of Chemical Information and Computer Sciences 43 (4), 1085-1093, 2003
Efficient computation of RNA folding dynamics
MT Wolfinger, WA Svrcek-Seiler, C Flamm, IL Hofacker, PF Stadler
Journal of Physics A: Mathematical and General 37 (17), 4731, 2004
A generalized model of the repressilator
S Müller, J Hofbauer, L Endler, C Flamm, S Widder, P Schuster
Journal of mathematical biology 53, 905-937, 2006
Folding kinetics of large RNAs
M Geis, C Flamm, MT Wolfinger, A Tanzer, IL Hofacker, M Middendorf, ...
Journal of molecular biology 379 (1), 160-173, 2008
Evolutionary patterns of non-coding RNAs
AF Bompfünewerer, C Flamm, C Fried, G Fritzsch, IL Hofacker, ...
Theory in Biosciences 123 (4), 301-369, 2005
RNAs everywhere: Genome‐wide annotation of structured RNAs
R Backofen, SH Bernhart, C Flamm, C Fried, G Fritzsch, J Hackermüller, ...
Journal of Experimental Zoology Part B: Molecular and Developmental …, 2007
Surveying phylogenetic footprints in large gene clusters: applications to Hox cluster duplications
SJ Prohaska, C Fried, C Flamm, GP Wagner, PF Stadler
Molecular phylogenetics and evolution 31 (2), 581-604, 2004
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