César Manuel Vargas Benítez
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Parallel approaches for the artificial bee colony algorithm
RS Parpinelli, CMV Benitez, HS Lopes
Handbook of Swarm Intelligence, 329-345, 2011
532011
Parallel artificial bee colony algorithm approaches for protein structure prediction using the 3dhp-sc model
CMV Benítez, HS Lopes
Intelligent Distributed Computing IV, 255-264, 2010
432010
Population-based harmony search using GPU applied to protein structure prediction
MH Scalabrin, RS Parpinelli, CMV Benítez, HS Lopes
International Journal of Computational Science and Engineering 9 (1-2), 106-118, 2014
252014
Performance Analysis of Swarm Intelligence Algorithms for the 3D-AB off-lattice Protein Folding Problem.
RS Parpinelli, CMV Benitiez, J Cordeiro, HS Lopes
J. Multiple Valued Log. Soft Comput. 22 (3), 267-286, 2014
242014
Hierarchical parallel genetic algorithm applied to the three-dimensional HP side-chain protein folding problem
CMV Benitez, HS Lopes
2010 IEEE International Conference on Systems, Man and Cybernetics, 2669-2676, 2010
202010
Protein structure prediction with the 3D-HP side-chain model using a master–slave parallel genetic algorithm
CMV Benítez, HS Lopes
Journal of the Brazilian Computer Society 16 (1), 69-78, 2010
182010
Parallelism, hybridism and coevolution in a multi‐level ABC‐GA approach for the protein structure prediction problem
CMV Benitez, RS Parpinelli, HS Lopes
Concurrency and Computation: Practice and Experience 24 (6), 635-646, 2012
172012
A parallel genetic algorithm for protein folding prediction using the 3d-hp side chain model
CMV Benitez, HS Lopes
2009 IEEE Congress on Evolutionary Computation, 1297-1304, 2009
172009
A heterogeneous parallel ecologically-inspired approach applied to the 3D-AB off-lattice protein structure prediction problem
CMV Benítez, RS Parpinelli, HS Lopes
2013 BRICS Congress on Computational Intelligence and 11th Brazilian …, 2013
132013
A deep bidirectional long short-term memory approach applied to the protein secondary structure prediction problem
LT Hattori, CMV Benitez, HS Lopes
2017 IEEE Latin American Conference on Computational Intelligence (LA-CCI), 1-6, 2017
92017
Ab-initio protein folding using molecular dynamics and a simplified off-lattice model
C Benítez, H Silvério Lopes
Journal of Bionanoscience 7 (4), 391-402, 2013
82013
An ecologically-inspired parallel approach applied to the protein structure reconstruction from contact maps
CMV Benítez, RS Parpinelli, HS Lopes
Proceedings of the 2016 on Genetic and Evolutionary Computation Conference …, 2016
52016
Molecular dynamics for simulating the protein folding process using the 3D AB off-lattice model
CMV Benítez, HS Lopes
Brazilian Symposium on Bioinformatics, 61-72, 2012
52012
A novel approach to protein folding prediction based on long short-term memory networks: a preliminary investigation and analysis
LT Hattori, CMV Benitez, M Gutoski, NMR Aquino, HS Lopes
2018 International Joint Conference on Neural Networks (IJCNN), 1-8, 2018
42018
Gene expression programming for evolving two-dimensional cellular automata in a distributed environment
CMV Benítez, W Weinert, HS Lopes
Intelligent Distributed Computing VIII, 107-117, 2015
42015
Simulation of the dynamic behavior of one-dimensional cellular automata using reconfigurable computing
WR Weinert, C Benitez, HS Lopes, CRE Lima
International Workshop on Applied Reconfigurable Computing, 385-390, 2007
42007
Reconfigurable hardware computing for accelerating protein folding simulations using the harmony search algorithm and the 3d-hp-side chain model
CMV Benítez, M Scalabrin, HS Lopes, CRE Lima
International Conference on Algorithms and Architectures for Parallel …, 2011
32011
PathMolD-AB: Spatiotemporal pathways of protein folding using parallel molecular dynamics with a coarse-grained model
LT Hattori, BA Pinheiro, RB Frigori, CMV Benítez, HS Lopes
Computational biology and chemistry 87, 107301, 2020
22020
A benchmark of optimally folded protein structures using integer programming and the 3D-HP-SC model
LT Hattori, M Gutoski, CMV Benítez, LF Nunes, HS Lopes
Computational biology and chemistry 84, 107192, 2020
12020
Contributions to the study of the protein folding problem using bioinspired computation and molecular dynamics
CMV Benítez
Universidade Tecnológica Federal do Paraná, 2015
12015
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