| Organoid profiling identifies common responders to chemotherapy in pancreatic cancer H Tiriac, P Belleau, DD Engle, D Plenker, A Deschênes, TDD Somerville, ... Cancer discovery 8 (9), 1112-1129, 2018 | 781* | 2018 |
| New insights into the Tyrolean Iceman's origin and phenotype as inferred by whole-genome sequencing A Keller, A Graefen, M Ball, M Matzas, V Boisguerin, F Maixner, ... Nature communications 3 (1), 698, 2012 | 582 | 2012 |
| Genome-wide cell-free DNA mutational integration enables ultra-sensitive cancer monitoring A Zviran, RC Schulman, M Shah, STK Hill, S Deochand, CC Khamnei, ... Nature medicine 26 (7), 1114-1124, 2020 | 255 | 2020 |
| Distinct classes of complex structural variation uncovered across thousands of cancer genome graphs K Hadi, X Yao, JM Behr, A Deshpande, C Xanthopoulakis, H Tian, ... Cell 183 (1), 197-210. e32, 2020 | 179 | 2020 |
| Genome-wide somatic variant calling using localized colored de Bruijn graphs G Narzisi, A Corvelo, K Arora, EA Bergmann, M Shah, R Musunuri, ... Communications biology 1 (1), 20, 2018 | 104 | 2018 |
| Genetic mechanisms of primary chemotherapy resistance in pediatric acute myeloid leukemia NA McNeer, J Philip, H Geiger, RE Ries, VP Lavallee, M Walsh, M Shah, ... Leukemia 33 (8), 1934-1943, 2019 | 88 | 2019 |
| PGBD5 promotes site-specific oncogenic mutations in human tumors AG Henssen, R Koche, J Zhuang, E Jiang, C Reed, A Eisenberg, E Still, ... Nature genetics 49 (7), 1005-1014, 2017 | 87 | 2017 |
| A Comprehensive Assay for CFTR Mutational Analysis Using Next-Generation Sequencing AN Abou Tayoun, CD Tunkey, TJ Pugh, T Ross, M Shah, CC Lee, ... Clinical chemistry 59 (10), 1481-1488, 2013 | 54 | 2013 |
| Comparing sequencing assays and human-machine analyses in actionable genomics for glioblastoma KO Wrzeszczynski, MO Frank, T Koyama, K Rhrissorrakrai, N Robine, ... Neurology: Genetics 3 (4), e164, 2017 | 43 | 2017 |
| Deep whole-genome sequencing of 3 cancer cell lines on 2 sequencing platforms K Arora, M Shah, M Johnson, R Sanghvi, J Shelton, K Nagulapalli, ... Scientific reports 9 (1), 19123, 2019 | 41 | 2019 |
| A recurrent novel MGA–NUTM1 fusion identifies a new subtype of high-grade spindle cell sarcoma D Diolaiti, FSD Cruz, G Gundem, N Bouvier, M Boulad, Y Zhang, AJ Chou, ... Molecular Case Studies 4 (6), a003194, 2018 | 31 | 2018 |
| Low-pass genome-wide sequencing and variant inference using identity-by-descent in an isolated human population A Gusev, MJ Shah, EE Kenny, A Ramachandran, JK Lowe, J Salit, ... Genetics 190 (2), 679-689, 2012 | 31* | 2012 |
| Whole-genome characterization of lung adenocarcinomas lacking alterations in the RTK/RAS/RAF pathway J Carrot-Zhang, X Yao, S Devarakonda, A Deshpande, JS Damrauer, ... Cell reports 34 (5), 2021 | 28 | 2021 |
| Identification of targetable BRAF ΔN486_P490 variant by whole-genome sequencing leading to dabrafenib-induced remission of a BRAF-mutant pancreatic adenocarcinoma KO Wrzeszczynski, S Rahman, MO Frank, K Arora, M Shah, H Geiger, ... Molecular Case Studies 5 (6), a004424, 2019 | 27 | 2019 |
| Analytical validation of clinical whole-genome and transcriptome sequencing of patient-derived tumors for reporting targetable variants in cancer KO Wrzeszczynski, V Felice, A Abhyankar, L Kozon, H Geiger, D Manaa, ... The Journal of Molecular Diagnostics 20 (6), 822-835, 2018 | 27 | 2018 |
| Somatic whole genome dynamics of precancer in Barrett’s esophagus reveals features associated with disease progression TG Paulson, PC Galipeau, KM Oman, CA Sanchez, MK Kuhner, LP Smith, ... Nature communications 13 (1), 2300, 2022 | 17* | 2022 |
| Novel Conserved Genotypes Correspond to Antibiotic Resistance Phenotypes of E. coli Clinical Isolates MC Swick, MA Evangelista, TJ Bodine, JR Easton-Marks, P Barth, ... PloS one 8 (6), e65961, 2013 | 17 | 2013 |
| The Possibility of De Novo Assembly of the Genome and Population Genomics of the Mangrove Rivulus, Kryptolebias marmoratus JL Kelley, MC Yee, C Lee, E Levandowsky, M Shah, T Harkins, RL Earley, ... Integrative and comparative biology 52 (6), 737-742, 2012 | 14 | 2012 |
| Whole genome sequencing-based discovery of structural variants in glioblastoma KO Wrzeszczynski, V Felice, M Shah, S Rahman, AK Emde, V Jobanputra, ... Glioblastoma: Methods and Protocols, 1-29, 2018 | 13 | 2018 |
| Sequencing and curation strategies for identifying candidate glioblastoma treatments MO Frank, T Koyama, K Rhrissorrakrai, N Robine, F Utro, AK Emde, ... BMC medical genomics 12, 1-16, 2019 | 9 | 2019 |
