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Carson Andorf
Carson Andorf
Computational Biologist, USDA-ARS
Verified email at iastate.edu
Title
Cited by
Cited by
Year
MaizeGDB update: new tools, data and interface for the maize model organism database
CM Andorf, EK Cannon, JL Portwood, JM Gardiner, LC Harper, ...
Nucleic acids research 44 (D1), D1195-D1201, 2016
1712016
MaizeGDB 2018: the maize multi-genome genetics and genomics database
JL Portwood, MR Woodhouse, EK Cannon, JM Gardiner, LC Harper, ...
Nucleic acids research 47 (D1), D1146-D1154, 2019
1582019
The maize W22 genome provides a foundation for functional genomics and transposon biology
NM Springer, SN Anderson, CM Andorf, KR Ahern, F Bai, O Barad, ...
Nature genetics 50 (9), 1282-1288, 2018
1402018
The Locus Lookup tool at MaizeGDB: identification of genomic regions in maize by integrating sequence information with physical and genetic maps
CM Andorf, CJ Lawrence, LC Harper, ML Schaeffer, DA Campbell, ...
Bioinformatics 26 (3), 434-436, 2010
972010
MaizeGDB: curation and outreach go hand-in-hand
ML Schaeffer, LC Harper, JM Gardiner, CM Andorf, DA Campbell, ...
Database 2011, 2011
922011
Maize GO annotation—methods, evaluation, and review (maize‐GAMER)
K Wimalanathan, I Friedberg, CM Andorf, CJ Lawrence‐Dill
Plant direct 2 (4), e00052, 2018
722018
De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes
MB Hufford, AS Seetharam, MR Woodhouse, KM Chougule, S Ou, J Liu, ...
Science 373 (6555), 655-662, 2021
582021
Technological advances in maize breeding: past, present and future
C Andorf, WD Beavis, M Hufford, S Smith, WP Suza, K Wang, ...
Theoretical and Applied Genetics 132 (3), 817-849, 2019
582019
MaizeGDB becomes ‘sequence-centric’
TZ Sen, CM Andorf, ML Schaeffer, LC Harper, ME Sparks, J Duvick, ...
Database 2009, 2009
542009
Automated update, revision, and quality control of the maize genome annotations using MAKER-P improves the B73 RefGen_v3 gene models and identifies new genes
MY Law, KL Childs, MS Campbell, JC Stein, AJ Olson, C Holt, N Panchy, ...
Plant physiology 167 (1), 25-39, 2015
532015
G-quadruplex (G4) motifs in the maize (Zea mays L.) genome are enriched at specific locations in thousands of genes coupled to energy status, hypoxia, low sugar, and nutrient …
CM Andorf, M Kopylov, D Dobbs, KE Koch, ME Stroupe, CJ Lawrence, ...
Journal of Genetics and Genomics 41 (12), 627-647, 2014
502014
Information integration and knowledge acquisition from semantically heterogeneous biological data sources
D Caragea, J Pathak, J Bao, A Silvescu, C Andorf, D Dobbs, V Honavar
International Workshop on Data Integration in the Life Sciences, 175-190, 2005
492005
Exploring inconsistencies in genome-wide protein function annotations: a machine learning approach
C Andorf, D Dobbs, V Honavar
BMC bioinformatics 8 (1), 1-12, 2007
472007
Choosing a genome browser for a Model Organism Database: surveying the maize community
TZ Sen, LC Harper, ML Schaeffer, CM Andorf, TE Seigfried, DA Campbell, ...
Database 2010, 2010
452010
Crowdsourcing image analysis for plant phenomics to generate ground truth data for machine learning
N Zhou, ZD Siegel, S Zarecor, N Lee, DA Campbell, CM Andorf, ...
PLoS computational biology 14 (7), e1006337, 2018
372018
AgBioData consortium recommendations for sustainable genomics and genetics databases for agriculture
L Harper, J Campbell, EKS Cannon, S Jung, M Poelchau, R Walls, ...
Database 2018, 2018
362018
Learning classifiers for assigning protein sequences to gene ontology functional families
C Andorf, A Silvescu, D Dobbs, V Honavar
Structural induction: towards automatic ontology elicitation 1001, 39, 2008
292008
Ontologydriven information extraction and knowledge acquisition from heterogeneous, distributed, autonomous biological data sources
V Honavar, C Andorf, D Caragea, A Silvescu, J Reinoso-Castillo, ...
Proceedings of the IJCAI-2001 Workshop on Knowledge Discovery from …, 2001
292001
POPcorn: an online resource providing access to distributed and diverse maize project data
EKS Cannon, SM Birkett, BL Braun, S Kodavali, DM Jennewein, A Yilmaz, ...
International journal of plant genomics 2011, 2011
262011
GenomeQC: a quality assessment tool for genome assemblies and gene structure annotations
N Manchanda, JL Portwood, MR Woodhouse, AS Seetharam, ...
BMC genomics 21 (1), 1-9, 2020
252020
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