Leandro Martínez
Leandro Martínez
Institute of Chemistry - State University of Campinas
Verified email at iqm.unicamp.br - Homepage
TitleCited byYear
PACKMOL: A package for building initial configurations for molecular dynamics simulations
L Martínez, R Andrade, EG Birgin, JM Martínez
Journal of computational chemistry 30 (13), 2157-2164, 2009
23452009
Packing optimization for automated generation of complex system's initial configurations for molecular dynamics and docking
JM Martínez, L Martínez
Journal of computational chemistry 24 (7), 819-825, 2003
3622003
Medium chain fatty acids are selective peroxisome proliferator activated receptor (PPAR) γ activators and pan-PPAR partial agonists
MV Liberato, AS Nascimento, SD Ayers, JZ Lin, A Cvoro, RL Silveira, ...
PloS one 7 (5), e36297, 2012
1112012
Molecular dynamics simulations of ligand dissociation from thyroid hormone receptors: evidence of the likeliest escape pathway and its implications for the design of novel ligands
L Martínez, P Webb, I Polikarpov, MS Skaf
Journal of medicinal chemistry 49 (1), 23-26, 2006
792006
Molecular dynamics simulations reveal multiple pathways of ligand dissociation from thyroid hormone receptors
L Martínez, MT Sonoda, P Webb, JD Baxter, MS Skaf, I Polikarpov
Biophysical journal 89 (3), 2011-2023, 2005
762005
Convergent algorithms for protein structural alignment
L Martínez, R Andreani, JM Martínez
BMC bioinformatics 8 (1), 306, 2007
732007
Gaining ligand selectivity in thyroid hormone receptors via entropy
L Martínez, AS Nascimento, FM Nunes, K Phillips, R Aparicio, SMG Dias, ...
Proceedings of the National Academy of Sciences 106 (49), 20717-20722, 2009
712009
Only subtle protein conformational adaptations are required for ligand binding to thyroid hormone receptors: simulations using a novel multipoint steered molecular dynamics …
L Martínez, I Polikarpov, MS Skaf
The journal of physical chemistry B 112 (34), 10741-10751, 2008
642008
Ligand dissociation from estrogen receptor is mediated by receptor dimerization: evidence from molecular dynamics simulations
MT Sonoda, L Martínez, P Webb, MS Skaf, I Polikarpov
Molecular endocrinology 22 (7), 1565-1578, 2008
572008
Structural basis of GC-1 selectivity for thyroid hormone receptor isoforms
L Bleicher, R Aparicio, FM Nunes, L Martinez, SMG Dias, ACM Figueira, ...
BMC structural biology 8 (1), 8, 2008
482008
Analysis of agonist and antagonist effects on thyroid hormone receptor conformation by hydrogen/deuterium exchange
ACM Figueira, DM Saidemberg, PCT Souza, L Martínez, TS Scanlan, ...
Molecular Endocrinology 25 (1), 15-31, 2011
442011
Globally convergent trust-region methods for self-consistent field electronic structure calculations
JB Francisco, JM Martı́nez, L Martı́nez
The Journal of chemical physics 121 (22), 10863-10878, 2004
402004
Dynamics of nuclear receptor Helix-12 switch of transcription activation by modeling time-resolved fluorescence anisotropy decays
MRB Batista, L Martínez
Biophysical journal 105 (7), 1670-1680, 2013
392013
Synthesis, characterization and catalytic properties of sol–gel derived mixed oxides
RF de Farias, U Arnold, L Martınez, U Schuchardt, MJDM Jannini, ...
Journal of Physics and Chemistry of Solids 64 (12), 2385-2389, 2003
392003
A review on the dynamics of water
MT Sonoda, NH Moreira, L Martínez, FW Favero, SM Vechi, LR Martins, ...
Brazilian journal of physics 34 (1), 3-16, 2004
332004
Enzyme microheterogeneous hydration and stabilization in supercritical carbon dioxide
RL Silveira, J Martínez, MS Skaf, L Martínez
The Journal of Physical Chemistry B 116 (19), 5671-5678, 2012
302012
Low order-value optimization and applications
R Andreani, JM Martínez, L Martínez, FS Yano
Journal of Global Optimization 43 (1), 1-22, 2009
302009
Identification of a new hormone-binding site on the surface of thyroid hormone receptor
PCT Souza, AC Puhl, L Martínez, R Aparício, AS Nascimento, ...
Molecular Endocrinology 28 (4), 534-545, 2014
282014
Automatic identification of mobile and rigid substructures in molecular dynamics simulations and fractional structural fluctuation analysis
L Martínez
PloS one 10 (3), e0119264, 2015
272015
Mapping the Intramolecular Vibrational Energy Flow in Proteins Reveals Functionally Important Residues
L Martínez, ACM Figueira, P Webb, I Polikarpov, MS Skaf
The Journal of Physical Chemistry Letters 2 (16), 2073-2078, 2011
252011
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Articles 1–20