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Chuan-Le Xiao
Chuan-Le Xiao
Sun Yat-sen University
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Immune cell profiling of COVID-19 patients in the recovery stage by single-cell sequencing
W Wen, W Su, H Tang, W Le, X Zhang, Y Zheng, X Liu, L Xie, J Li, J Ye, ...
Cell discovery 6 (1), 31, 2020
7882020
N6-methyladenine DNA modification in the human genome
CL Xiao, S Zhu, M He, D Chen, Q Zhang, Y Chen, G Yu, J Liu, SQ Xie, ...
Molecular cell 71 (2), 306-318. e7, 2018
4442018
MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads
CL Xiao, Y Chen, SQ Xie, KN Chen, Y Wang, Y Han, F Luo, Z Xie
nature methods 14 (11), 1072-1074, 2017
3552017
Detection of DNA base modifications by deep recurrent neural network on Oxford Nanopore sequencing data
Q Liu, L Fang, G Yu, D Wang, CL Xiao, K Wang
Nature communications 10 (1), 2449, 2019
2862019
Efficient assembly of nanopore reads via highly accurate and intact error correction
Y Chen, F Nie, SQ Xie, YF Zheng, Q Dai, T Bray, YX Wang, JF Xing, ...
Nature Communications 12 (1), 60, 2021
2402021
DeepSignal: detecting DNA methylation state from Nanopore sequencing reads using deep-learning
P Ni, N Huang, Z Zhang, DP Wang, F Liang, Y Miao, CL Xiao, F Luo, ...
Bioinformatics 35 (22), 4586-4595, 2019
2072019
A human circulating immune cell landscape in aging and COVID-19
Y Zheng, X Liu, W Le, L Xie, H Li, W Wen, S Wang, S Ma, Z Huang, J Ye, ...
Protein & cell 11 (10), 740-770, 2020
2042020
Phosphoproteomic Analysis Reveals the Multiple Roles of Phosphorylation in Pathogenic Bacterium Streptococcus pneumoniae
X Sun, F Ge, CL Xiao, XF Yin, R Ge, LH Zhang, QY He
Journal of proteome research 9 (1), 275-282, 2010
1972010
MethSMRT: an integrative database for DNA N6-methyladenine and N4-methylcytosine generated by single-molecular real-time sequencing
P Ye, Y Luan, K Chen, Y Liu, C Xiao, Z Xie
Nucleic acids research, gkw950, 2016
1282016
Global phosphoproteomic effects of natural tyrosine kinase inhibitor, genistein, on signaling pathways
GR Yan, CL Xiao, GW He, XF Yin, NP Chen, Y Cao, QY He
Proteomics 10 (5), 976-986, 2010
1172010
Semi-automated assembly of high-quality diploid human reference genomes
ED Jarvis, G Formenti, A Rhie, A Guarracino, C Yang, J Wood, A Tracey, ...
Nature 611 (7936), 519-531, 2022
1162022
Transfer RNAs Mediate the Rapid Adaptation of Escherichia coli to Oxidative Stress
J Zhong, C Xiao, W Gu, G Du, X Sun, QY He, G Zhang
PLoS genetics 11 (6), e1005302, 2015
1142015
CobB regulates Escherichia coli chemotaxis by deacetylating the response regulator CheY
R Li, J Gu, YY Chen, CL Xiao, LW Wang, ZP Zhang, LJ Bi, HP Wei, ...
Molecular microbiology 76 (5), 1162-1174, 2010
1092010
Phosphoproteome analysis of the pathogenic bacterium Helicobacter pylori reveals over‐representation of tyrosine phosphorylation and multiply phosphorylated …
R Ge, X Sun, C Xiao, X Yin, W Shan, Z Chen, QY He
Proteomics 11 (8), 1449-1461, 2011
732011
Genome-wide detection of cytosine methylations in plant from Nanopore data using deep learning
P Ni, N Huang, F Nie, J Zhang, Z Zhang, B Wu, L Bai, W Liu, CL Xiao, ...
Nature communications 12 (1), 5976, 2021
682021
NextDenovo: an efficient error correction and accurate assembly tool for noisy long reads
J Hu, Z Wang, Z Sun, B Hu, AO Ayoola, F Liang, J Li, JR Sandoval, ...
Genome Biology 25 (1), 107, 2024
612024
MDR: an integrative DNA N6-methyladenine and N4-methylcytosine modification database for Rosaceae
ZY Liu, JF Xing, W Chen, MW Luan, R Xie, J Huang, SQ Xie, CL Xiao
Horticulture research 6, 2019
552019
FANSe2: a robust and cost-efficient alignment tool for quantitative next-generation sequencing applications
CL Xiao, ZB Mai, XL Lian, JY Zhong, J Jin, QY He, G Zhang
PloS one 9 (4), e94250, 2014
542014
FANSe: an accurate algorithm for quantitative mapping of large scale sequencing reads
G Zhang, I Fedyunin, S Kirchner, C Xiao, A Valleriani, Z Ignatova
Nucleic acids research 40 (11), e83-e83, 2012
542012
Putative copper‐ and zinc‐binding motifs in Streptococcus pneumoniae identified by immobilized metal affinity chromatography and mass spectrometry
X Sun, C Xiao, R Ge, X Yin, H Li, N Li, X Yang, Y Zhu, X He, QY He
Proteomics 11 (16), 3288-3298, 2011
532011
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