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Daniel B Roche
Daniel B Roche
Team Lead Bioinformatics - Associate Manger, SOPHiA Genetics
Verified email at nespran.com - Homepage
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Cited by
Cited by
Year
DisProt 7.0: a major update of the database of disordered proteins
D Piovesan, F Tabaro, I Mičetić, M Necci, F Quaglia, CJ Oldfield, ...
Nucleic acids research 45 (D1), D219-D227, 2017
2692017
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20 (1), 1-23, 2019
2042019
The ModFOLD4 server for the quality assessment of 3D protein models
LJ McGuffin, MT Buenavista, DB Roche
Nucleic acids research 41 (W1), W368-W372, 2013
1232013
IntFOLD: an integrated server for modelling protein structures and functions from amino acid sequences
LJ McGuffin, JD Atkins, BR Salehe, AN Shuid, DB Roche
Nucleic acids research 43 (W1), W169-W173, 2015
1152015
The IntFOLD server: an integrated web resource for protein fold recognition, 3D model quality assessment, intrinsic disorder prediction, domain prediction and ligand binding …
DB Roche, MT Buenavista, SJ Tetchner, LJ McGuffin
Nucleic acids research 39 (suppl_2), W171-W176, 2011
1082011
Rapid model quality assessment for protein structure predictions using the comparison of multiple models without structural alignments
LJ McGuffin, DB Roche
Bioinformatics 26 (2), 182-188, 2010
1032010
FunFOLD: an improved automated method for the prediction of ligand binding residues using 3D models of proteins
DB Roche, SJ Tetchner, LJ McGuffin
BMC bioinformatics 12 (1), 1-20, 2011
692011
Proteins and their interacting partners: An introduction to protein–ligand binding site prediction methods
DB Roche, DA Brackenridge, LJ McGuffin
International journal of molecular sciences 16 (12), 29829-29842, 2015
592015
Improvement of 3D protein models using multiple templates guided by single-template model quality assessment
MT Buenavista, DB Roche, LJ McGuffin
Bioinformatics 28 (14), 1851-1857, 2012
582012
The FunFOLD2 server for the prediction of protein–ligand interactions
DB Roche, MT Buenavista, LJ McGuffin
Nucleic acids research 41 (W1), W303-W307, 2013
452013
Accurate template‐based modeling in CASP12 using the IntFOLD4‐TS, ModFOLD6, and ReFOLD methods
LJ McGuffin, AN Shuid, R Kempster, AHA Maghrabi, JO Nealon, ...
Proteins: Structure, Function, and Bioinformatics 86, 335-344, 2018
392018
Body mass index and complications following major gastrointestinal surgery: a prospective, international cohort study and meta‐analysis
EuroSurg Collaborative, R Blanco‐Colino, S Lee, SK Kamarajah, P Vasko, ...
Colorectal Disease 20 (8), O215-O225, 2018
362018
Automated tertiary structure prediction with accurate local model quality assessment using the intfold‐ts method
LJ McGuffin, DB Roche
Proteins: Structure, Function, and Bioinformatics 79 (S10), 137-146, 2011
272011
FunFOLDQA: a quality assessment tool for protein-ligand binding site residue predictions
DB Roche, MT Buenavista, LJ McGuffin
PloS one 7 (5), e38219, 2012
262012
Assessing the Quality of Modelled 3D Protein Structures Using the ModFOLD Server
DB Roche, MT Buenavista, LJ McGuffin
Protein Structure Prediction, 83, 2014
242014
The binding site distance test score: a robust method for the assessment of predicted protein binding sites
DB Roche, SJ Tetchner, LJ McGuffin
Bioinformatics 26 (22), 2920-2921, 2010
212010
TAPO: A combined method for the identification of tandem repeats in protein structures
P Do Viet, DB Roche, AV Kajava
FEBS Letters 589 (19), 2611-2619, 2015
182015
Classification of β-hairpin repeat proteins
DB Roche, P Do Viet, A Bakulina, L Hirsh, SCE Tosatto, AV Kajava
Journal of structural biology 201 (2), 130-138, 2018
172018
Functional analysis of Plasmodium falciparum subpopulations associated with artemisinin resistance in Cambodia
A Dwivedi, C Reynes, A Kuehn, DB Roche, N Khim, M Hebrard, ...
Malaria Journal 16 (1), 1-17, 2017
172017
Predicting protein structures and structural annotation of proteomes - Encyclopedia of Biophysics
DB Roche, MT Buenavista, LJ McGuffin
Springer - Encyclopedia of Biophysics, 2012
17*2012
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Articles 1–20