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Luiz Irber
Luiz Irber
Staff Bioinformatics Engineer, Ancestry
E-mail confirmado em ucdavis.edu - Página inicial
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Citado por
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Ano
The khmer software package: enabling efficient nucleotide sequence analysis
MR Crusoe, HF Alameldin, S Awad, E Boucher, A Caldwell, R Cartwright, ...
F1000Research 4, 2015
372*2015
sourmash: a library for MinHash sketching of DNA
C Brown, L Irber
Journal of Open Source Software 1 (5), 27, 2016
2462016
Critical Assessment of Metagenome Interpretation: the second round of challenges
F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ...
Nature methods 19 (4), 429-440, 2022
1892022
Large-scale sequence comparisons with sourmash
NT Pierce, L Irber, T Reiter, P Brooks, CT Brown
F1000Research 8, 2019
142*2019
Climate simulation and change in the Brazilian climate model
P Nobre, LSP Siqueira, RAF de Almeida, M Malagutti, E Giarolla, ...
Journal of Climate 26 (17), 6716-6732, 2013
832013
Haplotype-phased synthetic long reads from short-read sequencing
JA Stapleton, J Kim, JP Hamilton, M Wu, LC Irber, R Maddamsetti, ...
PloS one 11 (1), e0147229, 2016
382016
Lightweight compositional analysis of metagenomes with FracMinHash and minimum metagenome covers
L Irber, PT Brooks, T Reiter, NT Pierce-Ward, MR Hera, D Koslicki, ...
bioRxiv, 2022.01. 11.475838, 2022
372022
Streamlining data-intensive biology with workflow systems
T Reiter, PT Brooks, L Irber, SEK Joslin, CM Reid, C Scott, CT Brown, ...
GigaScience 10 (1), giaa140, 2021
362021
Evaluating Metagenome Assembly on a Simple Defined Community with Many Strain Variants
S Awad, L Irber, CT Brown
bioRxiv, 155358, 2017
272017
Context-aware genomic surveillance reveals hidden transmission of a carbapenemase-producing Klebsiella pneumoniae
A Viehweger, C Blumenscheit, N Lippmann, KL Wyres, C Brandt, JB Hans, ...
Microbial genomics 7 (12), 2021
132021
Efficient cardinality estimation for k-mers in large DNA sequencing data sets: k-mer cardinality estimation
LC Irber Jr, CT Brown
biorxiv, 056846, 2016
102016
khmer k-mer counting & filtering FTW
MR Crusoe, G Edvenson, J Fish, A Howe, L Irber, E McDonald, J Nahum, ...
62010
Sourmash branchwater enables lightweight petabyte-scale sequence search
L Irber, NT Pierce-Ward, CT Brown
bioRxiv, 2022.11. 02.514947, 2022
42022
Meta-analysis of metagenomes via machine learning and assembly graphs reveals strain switches in Crohn’s disease
TE Reiter, L Irber, AA Gingrich, D Haynes, NT Pierce-Ward, PT Brooks, ...
bioRxiv, 2022.06. 30.498290, 2022
42022
Decentralizing Indices for Genomic Data
LC Irber Jr
University of California, Davis, 2020
42020
khmer release v2. 1: software for biological sequence analysis
D Standage, A Aliyari, L Cohen, M Crusoe, T Head, L Irber, S Joslin, ...
Journal of Open Source Software 2 (15), 272, 2017
42017
Protein k-mers enable assembly-free microbial metapangenomics
TE Reiter, NT Pierce-Ward, L Irber, OB Botvinnik, CT Brown
bioRxiv, 2022.06. 27.497795, 2022
32022
Biogeographic Distribution of Five Antarctic Cyanobacteria Using Large-Scale k-mer Searching with sourmash branchwater
J Lumian, D Sumner, C Grettenberger, AD Jungblut, L Irber, ...
bioRxiv, 2022.10. 27.514113, 2022
32022
Amino Acid k-mers enable assembly-and alignment-free sequence analysis
NT Pierce-Ward, OB Botvinnik, TE Reiter, L Irber, CT Brown
Manubot, 2022
22022
An objective reference system for studying rings in the ocean
GP Castelão, LC Irber Jr, ABMV Boas
Computers & geosciences 61, 43-49, 2013
22013
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Artigos 1–20