| A 3D Map of the Human Genome at Kilobase Resolution Reveals Principles of Chromatin Looping SSP Rao, MH Huntley, NC Durand, EK Stamenova, ID Bochkov, ... Cell 159 (7), 1665-1680, 2014 | 8271 | 2014 |
| Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments NC Durand, MS Shamim, I Machol, SSP Rao, MH Huntley, ES Lander, ... Cell Systems 3 (1), 95-98, 2016 | 2584 | 2016 |
| Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes AL Sanborn, SSP Rao, SC Huang, NC Durand, MH Huntley, AI Jewett, ... Proceedings of the National Academy of Sciences 112 (47), E6456-E6465, 2015 | 1766 | 2015 |
| Cohesin Loss Eliminates All Loop Domains SSP Rao, SC Huang, BG St Hilaire, JM Engreitz, EM Perez, ... Cell 171 (2), 305-320. e24, 2017 | 1764 | 2017 |
| The Energetics and Physiological Impact of Cohesin Extrusion L Vian, A Pękowska, SSP Rao, KR Kieffer-Kwon, S Jung, L Baranello, ... Cell 173 (5), 1165-1178. e20, 2018 | 567 | 2018 |
| Genome Organization Drives Chromosome Fragility A Canela, Y Maman, S Jung, N Wong, E Callen, A Day, KR Kieffer-Kwon, ... Cell 170 (3), 507-521. e18, 2017 | 397 | 2017 |
| Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling G Nir, I Farabella, C Pérez Estrada, CG Ebeling, BJ Beliveau, HM Sasaki, ... PLoS genetics 14 (12), e1007872, 2018 | 250 | 2018 |
| A Pliable Mediator Acts as a Functional Rather Than an Architectural Bridge between Promoters and Enhancers L El Khattabi, H Zhao, J Kalchschmidt, N Young, S Jung, P Van Blerkom, ... Cell 178 (5), 1145-1158. e20, 2019 | 223 | 2019 |
| Myc Regulates Chromatin Decompaction and Nuclear Architecture during B Cell Activation KR Kieffer-Kwon, K Nimura, SSP Rao, J Xu, S Jung, A Pekowska, M Dose, ... Molecular Cell 67 (4), 566-578. e10, 2017 | 207 | 2017 |
| 3D genomics across the tree of life reveals condensin II as a determinant of architecture type C Hoencamp, O Dudchenko, AMO Elbatsh, S Brahmachari, ... Science 372 (6545), 984-989, 2021 | 201 | 2021 |
| Chromatin alternates between A and B compartments at kilobase scale for subgenic organization HL Harris, H Gu, M Olshansky, A Wang, I Farabella, Y Eliaz, A Kalluchi, ... Nature Communications 14 (1), 3303, 2023 | 68 | 2023 |
| Cohesin depleted cells rebuild functional nuclear compartments after endomitosis M Cremer, K Brandstetter, A Maiser, SSP Rao, VJ Schmid, M Guirao-Ortiz, ... Nature Communications 11 (1), 6146, 2020 | 46* | 2020 |
| Topologically Associated Domains Delineate Susceptibility to Somatic Hypermutation F Senigl, Y Maman, RK Dinesh, J Alinikula, RB Seth, L Pecnova, ... Cell Reports 29 (12), 3902-3915. e8, 2019 | 39 | 2019 |
| A rapid, low-cost, and highly sensitive SARS-CoV-2 diagnostic based on whole-genome sequencing PA Adastra, NC Durand, N Mitra, SG Pulido, R Mahajan, A Blackburn, ... BioRxiv, 2020.04. 25.061499, 2020 | 36 | 2020 |
| Genome-wide association study of human immunodeficiency virus (HIV)-1 coreceptor usage in treatment-naive patients from an AIDS clinical trials group study TJ Henrich, PJ McLaren, SSP Rao, NH Lin, E Hanhauser, F Giguel, ... Open forum infectious diseases 1 (1), ofu018, 2014 | 11 | 2014 |
| Differential use of CCR5 by HIV-1 clinical isolates resistant to small-molecule CCR5 antagonists TJ Henrich, NRP Lewine, SH Lee, SSP Rao, R Berro, RM Gulick, ... Antimicrobial agents and chemotherapy 56 (4), 1931-1935, 2012 | 10 | 2012 |
| The Hi-Culfite assay reveals relationships between chromatin contacts and DNA methylation state EK Stamenova, N Durand, O Dudchenko, MS Shamim, SC Huang, ... bioRxiv, 481283, 2018 | 4 | 2018 |
