| Hardware acceleration of BWA-MEM genomic short read mapping for longer read lengths EJ Houtgast, VM Sima, K Bertels, Z Al-Ars Computational biology and chemistry 75, 54-64, 2018 | 127 | 2018 |
| An FPGA-based systolic array to accelerate the BWA-MEM genomic mapping algorithm EJ Houtgast, VM Sima, K Bertels, Z Al-Ars 2015 international conference on embedded computer systems: Architectures …, 2015 | 71 | 2015 |
| Heterogeneous hardware/software acceleration of the BWA-MEM DNA alignment algorithm N Ahmed, VM Sima, E Houtgast, K Bertels, Z Al-Ars 2015 IEEE/ACM International Conference on Computer-Aided Design (ICCAD), 240-246, 2015 | 58 | 2015 |
| GPU-accelerated BWA-MEM genomic mapping algorithm using adaptive load balancing EJ Houtgast, VM Sima, K Bertels, Z Al-Ars Architecture of Computing Systems–ARCS 2016: 29th International Conference …, 2016 | 35 | 2016 |
| High performance streaming Smith-Waterman implementation with implicit synchronization on intel FPGA using OpenCL E Houtgast, VM Sima, Z Al-Ars 2017 IEEE 17th International Conference on Bioinformatics and Bioengineering …, 2017 | 24 | 2017 |
| An Efficient GPU-Accelerated Implementation of Genomic Short Read Mapping with BWA-MEM EJ Houtgast, VM Sima, K Bertels, Z Al-Ars ACM SIGARCH Computer Architecture News 44 (4), 38-43, 2017 | 19 | 2017 |
| Power-Efficiency Analysis of Accelerated BWA-MEM Implementations on Heterogeneous Computing Platforms EJ Houtgast, VM Sima, G Marchiori, K Bertels, Z Al-Ars International Conference on Reconfigurable Computing and FPGAs (ReConFig 2016), 2016 | 15 | 2016 |
| Navigation and interaction in a multi-scale stereoscopic environment E Houtgast, O Pfeiffer, Z Wartell, W Ribarsky, F Post IEEE Virtual Reality 2005, 275,276-275,276, 2005 | 13 | 2005 |
| Interaction volume management in a multi-scale virtual environment Z Wartell, E Houtgast, O Pfeiffer, CD Shaw, W Ribarsky, F Post Advances in Information and Intelligent Systems, 327-349, 2009 | 12 | 2009 |
| Comparative analysis of system-level acceleration techniques in bioinformatics: A case study of accelerating the smith-waterman algorithm for bwa-mem EJ Houtgast, VM Sima, K Bertels, Z Al-Ars 2018 IEEE 18th International Conference on Bioinformatics and Bioengineering …, 2018 | 6 | 2018 |
| Power-efficient accelerated genomic short read mapping on heterogeneous computing platforms EJ Houtgast, VM Sima, G Marchiori, K Bertels, Z Al-Ars 2016 IEEE 24th Annual International Symposium on Field-Programmable Custom …, 2016 | 5 | 2016 |
| Scalability of bioinformatics applications for multicore architectures EJ Houtgast Delft University of Technology, 2009 | 3 | 2009 |
| HMMER performance model for multicore architectures S Isaza, E Houtgast, G Gaydadjiev 2011 14th Euromicro Conference on Digital System Design, 257-261, 2011 | 2 | 2011 |
| Scaling HMMER Performance on Multicore Architectures S Isaza, E Houtgast, F Sanchez, A Ramirez, G Gaydadjiev 2011 International Conference on Complex, Intelligent, and Software …, 2011 | 2 | 2011 |
| Computational Challenges of Next Generation Sequencing Pipelines Using Heterogeneous Systems EJ Houtgast, VM Sima, K Bertels, Z Al-Ars | 1 | 2016 |
| On Hardware-Accelerated Maximally-Efficient Systolic Arrays: Acceleration and Optimization of Genomics Pipelines Through Hardware/Software Co-Design E Houtgast | | 2019 |
| Sequence Alignment Application Model for Multi-and Manycore Architectures S Isaza, E Houtgast, G Gaydadjiev International Journal of Information and Computer Security, 2011 | | 2011 |
Vlad-Mihai SimaIlluminaVerified email at illumina.com
