| Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum C Gieger, L Geistlinger, E Altmaier, M Hrabé de Angelis, F Kronenberg, ... PLoS genetics 4 (11), e1000282, 2008 | 805 | 2008 |
| Orchestrating single-cell analysis with Bioconductor RA Amezquita, ATL Lun, E Becht, VJ Carey, LN Carpp, L Geistlinger, ... Nature methods 17 (2), 137-145, 2020 | 599 | 2020 |
| Microbiome connections with host metabolism and habitual diet from 1,098 deeply phenotyped individuals F Asnicar, SE Berry, AM Valdes, LH Nguyen, G Piccinno, DA Drew, ... Nature medicine 27 (2), 321-332, 2021 | 578 | 2021 |
| Reporting guidelines for human microbiome research: the STORMS checklist C Mirzayi, A Renson, Genomic Standards Consortium, ... Nature medicine 27 (11), 1885-1892, 2021 | 201 | 2021 |
| Consensus on Molecular Subtypes of High-Grade Serous Ovarian Carcinoma GM Chen, L Kannan, L Geistlinger, V Kofia, Z Safikhani, D Gendoo, ... Clinical Cancer Research 24 (20), 5037-5047, 2018 | 112 | 2018 |
| Toward a gold standard for benchmarking gene set enrichment analysis L Geistlinger, G Csaba, M Santarelli, M Ramos, L Schiffer, N Turaga, ... Briefings in bioinformatics 22 (1), 545-556, 2021 | 102 | 2021 |
| Factors influencing the efficiency of generating genetically engineered pigs by nuclear transfer: multi-factorial analysis of a large data set M Kurome, L Geistlinger, B Kessler, V Zakhartchenko, N Klymiuk, ... BMC biotechnology 13, 1-13, 2013 | 102 | 2013 |
| Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space MC Schatz, AA Philippakis, E Afgan, E Banks, VJ Carey, RJ Carroll, ... Cell Genomics 2 (1), 2022 | 86 | 2022 |
| From sets to graphs: towards a realistic enrichment analysis of transcriptomic systems L Geistlinger, G Csaba, R Küffner, N Mulder, R Zimmer Bioinformatics 27 (13), i366-i373, 2011 | 81 | 2011 |
| Bioconductor’s EnrichmentBrowser: seamless navigation through combined results of set-& network-based enrichment analysis L Geistlinger, G Csaba, R Zimmer BMC bioinformatics 17, 1-11, 2016 | 76 | 2016 |
| Multiomic Analysis of Subtype Evolution and Heterogeneity in High-Grade Serous Ovarian Carcinoma L Geistlinger, S Oh, M Ramos, L Schiffer, RS LaRue, CM Henzler, ... Cancer research 80 (20), 4335-4345, 2020 | 64 | 2020 |
| Multiomic integration of public oncology databases in bioconductor M Ramos, L Geistlinger, S Oh, L Schiffer, R Azhar, H Kodali, I de Bruijn, ... JCO Clinical Cancer Informatics 1, 958-971, 2020 | 59 | 2020 |
| Genome-wide detection of CNVs and their association with meat tenderness in Nelore cattle VH Silva, LCA Regitano, L Geistlinger, F Pértille, PF Giachetto, ... PloS one 11 (6), e0157711, 2016 | 51 | 2016 |
| Identification of putative regulatory regions and transcription factors associated with intramuscular fat content traits ASM Cesar, LCA Regitano, JM Reecy, MD Poleti, PSN Oliveira, ... BMC genomics 19, 1-20, 2018 | 49 | 2018 |
| Tobacco exposure associated with oral microbiota oxygen utilization in the New York City Health and Nutrition Examination Study F Beghini, A Renson, CP Zolnik, L Geistlinger, M Usyk, TU Moody, ... Annals of epidemiology 34, 18-25. e3, 2019 | 32 | 2019 |
| A comprehensive gene regulatory network for the diauxic shift in Saccharomyces cerevisiae L Geistlinger, G Csaba, S Dirmeier, R Küffner, R Zimmer Nucleic acids research 41 (18), 8452-8463, 2013 | 30 | 2013 |
| Evolution of protein phosphorylation for distinct functional modules in vertebrate genomes Z Wang, G Ding, L Geistlinger, H Li, L Liu, R Zeng, Y Tateno, Y Li Molecular biology and evolution 28 (3), 1131-1140, 2011 | 29 | 2011 |
| Detection of co-expressed pathway modules associated with mineral concentration and meat quality in nelore cattle WJS Diniz, G Mazzoni, LL Coutinho, P Banerjee, L Geistlinger, ... Frontiers in genetics 10, 440638, 2019 | 28 | 2019 |
| HMP16SData: efficient access to the Human Microbiome Project through Bioconductor L Schiffer, R Azhar, L Shepherd, M Ramos, L Geistlinger, C Huttenhower, ... Am J Epidemiol 188 (6), 1023-1026, 2018 | 28 | 2018 |
| Genome-wide association study identifies two novel regions at 11p15. 5-p13 and 1p31 with major impact on acute-phase serum amyloid A C Marzi, E Albrecht, PG Hysi, V Lagou, M Waldenberger, A Toenjes, ... PLoS genetics 6 (11), e1001213, 2010 | 26 | 2010 |
